Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_IGSF11_0003700

Sequence Length

532 nt

GC Content

0.4680

UUCCAAGAGGAAAUUGCAGAAACCAGUCUGAGUCCAUCACCAAAGGAAGUCUUGCAAGAUGAGGGGCAGAAGAAGUGAGCCUAGAAGGAUGGACUUGCUGAACUUCUGUUUAUCCUCCAAGAUGUGAUUAGUCUUCAUAGAACUCCAUAGAAGUUCAGGAAGCAAGGAGCAAUUUGACUUUAGCAGCAGUGUGGAGGAUGGAUUGGAAGUGGACCGGAGGAGAUCAGUUGAGGCUGUCGUGGUUGUUAAAGAUCAUCUCUACACAUAUUUGAGGGCCAGUGUCCUUAACUGUGUCUUGUAUAUUUGAGAAGCCGUAUGCCAUAAUGUAUUCUGGAGCACACUUCUUAGAUUUGAAUCUCAGCUAGCCCACUUACACACUUAGACCCAGAAAGAAGAGGGCAGCACACCUCAGGGCCAGCAGGAGGAAGGGGAGUCAUCCAGGACAUGUACUCUCAACUGGCGGUUGGGAAGAAGACAGAAAGAGAUAGACAUGUGGGUCGAAGUCUUUACUGGGGUCCGUCGUGUUACCCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-142.20 kcal/mol

Ensemble Metrics

Free Energy: -152.80

Frequency: 0.0000

Diversity: 191.30

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....))))....((((......))))((((((((..........((((((......((((((((((((.((((((((.........)).))))))...)))))))...)))))))))))((((.......))))....(((((((...(((...((((((((......)))).))))...)))..)))))))))))))))(((((((..((((((.......((((.(((...((.(.((.(((((...((.....(((((...((((((((....)))))))).)))))..))....))))).)).)))...))).))))...))))))....))))))).((((....))))..(((.((((.(((....................))).)))))))...((((..(.....)..))))..(((....(((...((((......((((((((...))))))))......((((((((....(((......)))....))))).)))..))))...)))...)))..

Thermodynamic Ensemble Prediction

((((,.,,|||..,,(((((,..((((..(((((((((.....{{{...(((({{.....,..,,|||.,||,.,,..,))).....)))))))))))))..||}))}|,,,|||||{{...((({,...{,{,||,,.,,,((({{{{..,|||}..{{{(({{{..,,..}))),))}}...}))..}})))))}}))))||||}}||(((((((,(((.,(((((.((((((.,{,{({{(.,,,..}}}}|||||{,{(((,,.((((((((....)))))))).))))),,,{{{,{{{|||,||,,.||,,}|,,..{{{,.|{{|||{..||.||||||,||,.....|{{{.(((.((((.{{{.....,,............,,,|{||,,,,,...||||.}|}}.}})..)))),}}))),}},.))))})}}}},,.,((((((((...))))))))......|{,,,|||,...(((......))),,,})))),})))}.,))).}}).))}.,}))}