Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_IGSF6_0000300

Sequence Length

599 nt

GC Content

0.3189

AAACUAAAAGCCGCCUUAAAAUCUUCAAAAAGGGCUAAAGUUAUUAAAAAAGAAUACCUUUUGGCUAUGUGUAUAAGAAGGGAGAUGUAUACCAUUGUGUUAGGAUUACUAUAAAUCCUACAAUCAACGUCAGUUUGUUCAAUUAGUUUUUAAUGGAGUAAAAGCAUCUCAAAAAUGAUGUAAAAAUUAAGUCUCAUUGUAUAUCACUUAAAUAUUAAGUUAGUUUAAUCUUAUUAGGGCAUGAGAUAUCUGCCACCAUUGUUAUGAGUACAUAAAAUGUUUCAUAGACUUUCCUUCUCUUCUUGGCAGUCAAAAUCCAACCCUCUAAGAAACAAAGAAAUAAAAGAAGACUCACAAAAGAAGAAGAGUGCUCGGCGUAUUUUUCAGGAAAUUGCUCAAGAACUAUACCAUAAGAGACAUGUGGAAACAAAUCAGCAAUCUGAGAAAGAUAACAACACUUAUGAAAACAGAAGAGUACUUUCCAACUAUGAAAGGCCAUAGAAACGUUUUAAUUUUCAAUGAAGUCACUGAAAAUCCAACUCCAGGAGCUAUGGCAGUGUUAAUGAACAUAUAUCAUCAGGUCUUAAAAAAAAAUAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.60 kcal/mol

Ensemble Metrics

Free Energy: -114.62

Frequency: 0.0000

Diversity: 200.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.(((((((((.............)))))............(((((.....)))))))))..........(((.((((((((.....(((((...((((((......)))))))))))..)))))..))).)))..)))))))((..((((((....(((((........)))))........(((((..((.(((.((((((((...))))))..(((...(((((..((((..((.(((..((((((......(((((((.((((...)))))))))))................)))))).....))))).)))).))))))))...)).))).))..)))))..........(((((((((.....))))))))).(((((.(((((...........((((((.(...(((.........((((....))))........))).).)))))).........))))).)))))..(((((......)))))..........(((((((.((....)).)))))))...))))))(((.((((((..(((((....)))))...)))).)).))).............))

Thermodynamic Ensemble Prediction

((((({,.(((({((({.............})))),..,,.,,,,..,,,,,,,.,,||}}|}}}}..,,{{,,,,|||||{{(((((,|,,.{{{{{{.,((((((......))))))))),,.,|||,,.,}}}}}},..||}}}}}{|,,|{|{{|....{((((........)))))........,{{{{..||.|||,||{(((({...}))))),,|||,..,{{{{,,{{(({,,((,,,.||||||,.....,{((((({.{{{(,,,|||||||}}}|.|,,{{,,,,{,{{,{{||,||{,....,,...,,,|,},,},......}}......,..,))))..,,..,},,||{(((((({{..,||}||||||,((,,{{((((,..........{((((,,.....|||}}.......||||}}}}))))}}}}.,,..,....,}}}}}......,..)))))})))},..,,,,|,,,,.,|}}|),,,,,,,,,.(((((((.((....)).)))))))...}}}}}|||{.||||||,.{((({....})))),},))}).)),)))}............}}