Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ISPD_0000500

Sequence Length

250 nt

GC Content

0.2080

AGAGAAUUUCCCAAGAGAUUUGUGUAGUUAUGGAUACAGAAGAAGAUAACAAACAUGUAGGUCAUCUUCUUGAAGAAGUGCUGAAAAGUGAAUUAAAUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAUAUGCAUAUUUUUAAGGUGACAUUGAAAAGUACUAUAAAGAUUCUAAAUAUGUUGUUUUUACAAAACAAAAUGUAAAUAAAUUAUUGAUUUAAAAUCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-22.90 kcal/mol

Ensemble Metrics

Free Energy: -27.89

Frequency: 0.0003

Diversity: 48.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((((((....))))))).........)((((..((((((.(((.(((....)))..))).)))))).........(((....)))...((((((((..................................................(((((....(((((((.((((.(........))))).))))))).....))))).....((((((........))))))........)))))))).))))

Thermodynamic Ensemble Prediction

{..(((((((....))))))).|,|{,...,,.,|,}{(((((.(((.(({....}))..))).)))))),.......,(((....))),..{(((({{{..................................................(((((....(((((((.(((,,(........))))).))))))).....))))){{(({((,{{|,,,,,,..}}}}},........}))))))}.,,))