Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0002300

Sequence Length

309 nt

GC Content

0.4078

GUACCAUGCAUUUCACGGUGGCCUUGUGGAGACAACGCCUUAACCCAAGGAAGUGACUCAAACUGUGAGAACUUCAGGUUUUCCAACCUAUUGGUGGUAUGUCUGACAGUGGAUCACAACUUGGUUCAAUGGGUAGCCUCACCAUGAAAUCACAGCUUCAGAUCACUGGGAAAACAAUAUUGAGGAAUGUGAUUUGGAAAUGUACUUCUCCGUUGACAAAGAAAUUCUAGGUGAAAUUAAGAGUCAUGAUCUGAAACCUAAUGGUGGCAAUAUUCUUGUAACAGAAGAAAAUAAAGAGGAAUACAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.30 kcal/mol

Ensemble Metrics

Free Energy: -73.82

Frequency: 0.0000

Diversity: 93.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((.((((((..((((((.((((....)))).)))...)))....))))))........(((((..((((((((....(((.((....)))))....))))).)))...))))).(((((((..((((.........))))..))))).)).(((((((((.(((........((((..(((((....((((..((((........))))..))))...))))).))))..........)))))))))))).....)))))).(..(((((((...................))))))).....)

Thermodynamic Ensemble Prediction

,((((((,,,((((,.((((((.((((....)))).)))...}}}..,{|,.{{{({((....(((((..((((((((,...(({{((....)))))....))))).)))...))))).|||}|,{{{{((({.,,...{,||,,.{(((((((.((((((.,...((......))...))))))..))))))))|}..,||..,,,,}}))}}}||..||...,||,..,,}}}.....}})))))..}}}|,,|{{..}})))}.|..{{(((((.,.....,,,,........))))})),.,..)