Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0005600

Sequence Length

281 nt

GC Content

0.4555

GUUUUCCAACCUAUUGGUGGUAUGUCUGACAGUGGAUCACAACUUGGUUCAAUGGGUAGCCUCACCAUGAAAUCACAGCUUCAGAUCACUGCAUCUGUCAAUGGUUCACCAUCUGCCACUUCUGAAAGUGAUGGGUCUAGUACAGGCUCUCUGCCGCCGACAAAUACAAAUACAAAUACAUCUGAAGGAGCAACAUCUGGAUUAAUAAUUCCUCUUACUAUAUCUGGAGGCUCAGGCCCUAGGCCAUUAAAUCCUGUAACUCAAGCUCCCUUGCCACCUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-61.80 kcal/mol

Ensemble Metrics

Free Energy: -68.32

Frequency: 0.0000

Diversity: 54.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((....)))(((..(((((((((((((((((((((((..(((((((((..((((.........))))..))))).)).))..))))....)).))))))((((....))))....(((((....)))))..((((((.....)))))).........))))........................(((((.......(((((.......(((((..........)))))....((((...))))....)))))..........)))))..))))))))))

Thermodynamic Ensemble Prediction

(((....)))(((..(((((((.{,,(({(((((((((..{{(((((((..((((,........))))..))))).)).}}..)))),}}}}}.}}||},{(((....}}||{.,.(((({....})))),}}}{{{,.,....(((.....))),,.))),........................(((((.....,.(((((,,,....(((((..........)))))....((((...)))),,},})))).}........)))))..))))))))))