Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0009900

Sequence Length

261 nt

GC Content

0.4751

UUGAAGAAGUAGUUGUGACUUUGCAGCUUGGAGGUGACAAAGAGCCAACAGAGACAAUAGGAGACUUGUCAAUUUGUCUUGAUGGGCUACAGUUAGAGUCUGAAGUUGUUACCAAUGGUGAAACUACAUGUUCAGAAAAUGGGGUUUCGCUCUGUUUGCCCAGGCUGGAGUGCAAUAGUGCGAUCUCGGCUCACUGCAACCUCUGCCUCCCGGGUUUAAGUGAUUCUCCUAUCUCAGCCUCCCGAGUAGCUGGGUUUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.80 kcal/mol

Ensemble Metrics

Free Energy: -78.13

Frequency: 0.0000

Diversity: 40.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......)))(((((((((.((.(((((((((((((....((((....(((((((...((......))...)))))))....))))...)))....((((((..(((((((...)))).....)))..))))))....((((..(((((......((((((((.((((((((.....((.......))....))))..))))))))...))))...)))))..)))).......)))).)))))).)).))).))))))

Thermodynamic Ensemble Prediction

(((......)))(((((((((.((.((((((((((((,....((((....(((((((...((......))...)))))))....))))...,,,....((((((,,({(((((...))))}.,,.,)}..))))))....((((..(((((......((((((((.((((((((..,({{({....,,)).,,.))))..))))))))...))))...)))))..))))....}}.})))))})))).)).)))))}))))