Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0012700

Sequence Length

250 nt

GC Content

0.4000

GCAUGGUGGCUCACACCUGUAAUCCCAGCACUCUGGGAAGCCAAGGCGGGAGGAUCACUUGAGUCCGGGAGUUUGAGACCAGCAUGGACAACAUGGUGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUUGGGAAAUGAGAUUCACAGUGGAUGGAAUUCCAUAUUUUGUGGACCACAAUAGAAGAACUACCACCUAUAUAGAUCCCCGCACAGGAAAAUCUGCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-48.80 kcal/mol

Ensemble Metrics

Free Energy: -53.29

Frequency: 0.0007

Diversity: 58.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((((.....)))))))(.((((((....)))))).((....))(((.((((..((((....((((.(((((....((.((((.....)))).))....................................................((((((........(((((((...((((....))))...))))))))).))))...................))))).))))..))))...)))).))))

Thermodynamic Ensemble Prediction

(((.((((.....)))))))(.((((((....)))))).{{....||(((.{(((,.|{{{.{|,|{({|{{{{.....((.((((.....)))).))....................................................||{{{{......,.(((((((,,,({{{...,))))...}))))))}).},||,{..|..,,.,}..}},,.,,)})}))})}.}|})...,))),,}})