Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0015300

Sequence Length

220 nt

GC Content

0.4182

GUGAUGAGAAAACAAGCUUAGAAAGGGAAAGGAACUUGCUUGAGUUAAUAGCGUUAAGUGGGACAGUUGAACCUGGAACAGCCUUACCUUCAGAGCCUGAGCUCGUAACUAUCAUGCUUUACUGCCACCUGAAGUUGGGAUGAUAUACAAAAUCAAGAUUUAUUUGCUACAUCACAAAGUAAAGAAUUUGAUCCUCUUGGUCCAUUGCCACCUGGAUGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.80 kcal/mol

Ensemble Metrics

Free Energy: -47.29

Frequency: 0.0007

Diversity: 40.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.((..((.(((((((..((((.((((..((((((((((((...))).))))))))).(((......)))......)))).))))......))))))).))...((((((.((..(((.........))).)).))))))......((((.(((((.((((((.........)))))))))))))))((....))))))))))(.((.....)))

Thermodynamic Ensemble Prediction

((((((.({...{,(({{{{(..((({.((((..((((((((((({...})).))))))))).(((......)))......)))).))))..,,,,,}}}))),||,..((((((.((..(((.........))).)).)))))),}}...(((((({(({.((((((.........))))))})))))))){{.,,,)}))))))))(.((.....)))