Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0015600

Sequence Length

380 nt

GC Content

0.4500

GUGAUGAGAAAACAAGCUUAGAAAGGGAAAGGAACUUGCUUGAGUUAAUAGCGUUAAGUGGGACAGUUGAACCUGGAACAGCCUUACCUUCAGAGCCUGAGCUCGUAACUAUCAUGCUUUACUGCCACCUGAAGUUGGGAUGAUAUACAAAGUGAGCACAAAUGGAUCAGAUGACCCUGAAGAUGCAGGAGCUGGUGAAAAUAGGAGAGUCAGUGGGAAUAAUUCUCCAUCACUCUCAAAUGGUGGUUUUAAACCUUCUAGACCUCCAAGACCUUCACGACCACCACCACCCACCCCACGUAGACCAGCAACUGGCCAUGCCACAGCACAUAAAGAUUACAGUGACAAGAAAAACAUUGUUUGAGGAUUCCUUUCAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.80 kcal/mol

Ensemble Metrics

Free Energy: -88.78

Frequency: 0.0000

Diversity: 92.53

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..((......)).))((.((((((((((((..((((((((((((...))).))))))))).(((......)))......))))..(((((((((....))))(((..((((((.((..(((.........))).)).)))))))))...(((.(((....(((.((((.....((((......)))).((((((........((((((..(((((((...))).)))).))))))...((((((((........(((.(.....).))).......)))))))).................))))))..)))))))))))))..............((((((..........)))))).))))).))))))))...))

Thermodynamic Ensemble Prediction

((..(({,....|,.||({,(,{{(((,((((..((((((((((({...,)).))))))))).{{{......}}}.,,,,,}}}}.,||||.{{||.}}.}))}||,..{(((((.((..(({.,,....,.))).)),)))))},,}...(((.(({....(((.((((.....((((......)))).((((((........((((((..((((((,...,)).)))).))))))...((((((((........(((.{.....}.))).......)))))))).............,,..))))))..)))))))))))))..{,,.........,,,|||.,........,,))))}}|}}}.})))))))..,))