Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0016000

Sequence Length

348 nt

GC Content

0.4713

AGUGAGCACAAAUGGAUCAGAUGACCCUGAAGAUGCAGGAGCUGGUGAAAAUAGGAGAGUCAGUGGGAAUAAUUCUCCAUCACUCUCAAAUGGUGGUUUUAAACCUUCUAGACCUCCAAGACCUUCACGACCACCACCACCCACCCCACGUAGACCAGCAUCUGUCAAUGGUUCACCAUCUGCCACUUCUGAAAGUGAUGGGUCUAGUACAGGCUCUCUGCCGCCGACAAAUACAAAUACAAAUACAUCUGAAGGAGCAACAUCUGGAUUAAUAAUUCCUCUUACUAUAUCUGGAGGCUCAGGCCCUAGGCCAUUAAAUCCUGUAACUCAAGCUCCCUUGCCACCUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.40 kcal/mol

Ensemble Metrics

Free Energy: -87.46

Frequency: 0.0001

Diversity: 83.65

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.(((...((((((((((.((((..(((((((((.((((((........((((((..(((((((...))).)))).))))))...((((((((........(((.(.....).))).......)))))))).................)))))).))))...((((....))))(((.(((((....))))).)))(((..((...(((.....))))).))).................)))))..))).)...))))))...........(((((..........)))))....((((...)))).....)))))))..)))..)))((..........))

Thermodynamic Ensemble Prediction

((((((.{{{...((((((((((.((((..(((((((((.((((((........((((((..((((((,...,)).)))).))))))...((((((((........(((.{.....}.))).......))))))))..............,..)))))).)))),,.{{((....})}},||.(((((....})))),,}}{{{..{{...(((.....))),,.,}}.................}))))..}}},}...}}))}|{{,........{{{{{.........,))))),...((((...)))).....})))})}..)))..)))((..........))