Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0018900

Sequence Length

341 nt

GC Content

0.4604

UUGGGAGCAGAGAGUGGACCAGCACGGGCGAGUUUACUAUGUAGAUCAUGUUGAGAAAAGAACAACAUGGGAUAGACCAGAACCUCUACCUCCUGGCUGGGAACGGCGGGUUGACAACAUGGGACGUAUUUAUUAUGUUGACCAUUUCACAAGAACAACAACGUGGCAGAGGCCAACACUGGAAUCCGUCCGGAACUAUGAACAAUGGCAGCUACAGCGUAGUCAGCUUCAAGGAGCAAUGCAGCAGUUUAACCAGAGAUUCAUUUAUGGGAAUCAAGAUUUAUUUGCUACAUCACAAAGUAAAGAAUUUGAUCCUCUUGGUCCAUUGCCACCUGGAUGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.70 kcal/mol

Ensemble Metrics

Free Energy: -88.32

Frequency: 0.0000

Diversity: 118.49

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((..(((....(((((((((...(((((((((((((.(((.((((((((((.........)))))))((.((((........))))))((((((((((..(((...(((((........(((((.((((....(((((.((.((((((............)))).)).)).)))))...)))).)))))....((((.....)))))))))....)))..))))))...))))((...))(((((..........(((((........))))).........)))))..)))))).)))...))))))).)))..))))))))))))..))........

Thermodynamic Ensemble Prediction

,.((..({{....(((((((((...(((((((((((((.(((.{,{(((((((.........))))))){{.{{{{........)))}}|{{(({((((,..,||}},{((((.,,..{(((((((,(,,,..}})))}|.||,|{((,,..,,........||||{,,.,)|)},,.,||||,}.}})))}}..{{((,,...}|||,||||.,.,|}}.,)}}|||,..,})))}.,||,{{{{|.,.,.,,...(((((........)))))..,.,|,,.|}})}.}}},}}}.))))},,}))))).)))}.)))))))))))),,||,....,,,