Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0021600

Sequence Length

359 nt

GC Content

0.4290

AGAAGAGAACAGACAGCAAUGGCAGAGUAUAUUUCGUCAACCACAACACACGAAUUACACAAUGGGAAGACCCCAGAAGUCAAGGUCAAUUAAAUGAAAAGCCCUUACCUGAAGGUUGGGAAAUGAGAUUCACAGUGGAUGGAAUUCCAUAUUUUGUGGACCACAAUAGAAGAACUACCACCUAUAUAGAUCCCCGCACAGGAAAAUCUGCCCUAGACAAUGGACCUCAGAUAGCCUAUGUUCGGGACUUCAAAGCAAAGGUUCAGUAUUUCCGGUUCUGGUGUCAGCAACUGGCCAUGCCACAGCACAUAAAGAUUACAGUGACAAGAAAAACAUUGUUUGAGGAUUCCUUUCAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.80 kcal/mol

Ensemble Metrics

Free Energy: -74.85

Frequency: 0.0000

Diversity: 115.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((((....(((((((.....((.((.(((((............))))).)).))..((((.....))))...((((..((.((((..........(((..(((....))).)))......(.(((((((...((((....))))...))))))).).........(((((.....((....((.((((.(((.(((...(((((.((........))....)))))..))).)))..))))))....))....))))).((((..(((((((((....))).))))))..)))).............))))))..))))........)))))))....).))).)))).....

Thermodynamic Ensemble Prediction

,(({(.({,,...,,{{..{({{{{{((.{{.(((((............})))}.}}.,}..((((.....))))...{,.,,((({,......,},....,||},{((,,..))).)}),..||.,.{{(((((,{,({{{...,))))...})))))).}.,.,{,{..(,,{{.....||,,..,{.|||{.||{,|||...,||||,|(,......,)).,,,|||||,,|||.|||,.}|},,,.}..}},,.})))},.{{{{..(((((((((....))).)))))),.})))},..,|,,..........,.}}).,........},})))))),}}.))),)))|....}