Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ITCH_0025900

Sequence Length

488 nt

GC Content

0.3607

GCUAUUUUAAUGAUGAGAGUUGACUUAAGUCAUUCUUCUAUUUCAGCAACUGGCCAUGCCACAGCACAUAAAGAUUACAGUGACAAGAAAAACAUUGUUUGAGGAUUCCUUUCAACAGGGAAGGAUAACUACUGCUUGCAGAUAAACCCCGCUUCUUACAUCAAUCCAGAUCACCUGAAAUAUUUUCGUUUUAUUGGCAGAUUUAUUGCCAUGGCUCUGUUCCAUGGGAAAUUCAUAGACACGGGUUUUUCUUUACCAUUCUAUAAGCGUAUCUUGAACAAACCAGUUGGACUCAAGGAUUUAGAAUCUAUUGAUCCAGAAUUUUACAAUUCUCUCAUCUGGGUUAAGGAAAACAAUAUUGAGGAAUGUGAUUUGGAAAUGUACUUCUCCGUUGACAAAGAAAUUCUAGGUGAAAUUAAGAGUCAUGAUCUGAAACCUAAUGGUGGCAAUAUUCUUGUAACAGAAGAAAAUAAAGAGGAAUACAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.80 kcal/mol

Ensemble Metrics

Free Energy: -105.09

Frequency: 0.0000

Diversity: 150.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

..........((((((((((.(((....))))))))(((((((((.(...((((...))))...............((((((..........))))))...((((((.((((((((.((((((........(((....)))...............(((((...((((((((((.((((((......)))))).((((((.....))))))(((...(((((.(((.(......(((((....(((........)))..)))))...).)))...)))))..))).(((((.(((((((((...))))).))))))))).........((((.((((.....(((......))).....)))))))))))))))))).))))))))))).)))))..))).)))))).).))))))..)))(((((.((..(....)..)).)))))..(((((((...................)))))))))))).

Thermodynamic Ensemble Prediction

((((.,,...(((,(((((.{(((....))))}}))},,.,.}}}..,,.))))(.{(({{{..,......,,,,,,,,{(({{........|}}})},,.((((((,((((((((.((((((........{{{....}}}...............(((((...((((((((((,({{(((,,{,,,|||||,.((((({.....}))))}{((.,.(({((,{{((,,..{{{({(((.,,,(((........)))..}}}}}...,,}.}}}})))}}..))}.,{(({.(((((((({...})))}.}))))))|{{,.......||||.{{{{.,,,,|||,,..,,))).,,,,)}})),,,)))))))))).))))))))))).)))))..}}).}})))},|||,......,|,}}}}},}}}},..|||.....)))))).,.(((((.......}}}},......||}}}},...}}.)