Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_KLK3_0000200

Sequence Length

991 nt

GC Content

0.5177

GUCCCCGCUCCCUCCCACUUACCCCAGAACUUUCUCCCCAUUGCCCAGCCAGCUCCCUGCUCCCAGCUGCUUUACUAAAGGGGAAGUUCCUGGGCAUCUCCGUGUUUCUCUUUGUGGGGCUCAAAACCUCCAAGGACCUCUCUCAAUGCCAUUGGUUCCUUGGACCGUAUCACUGGUCCACCUCCUGAGCCCCUCAAUCCUAUCACAGUCUACUGACUUUUCCCAUUCAGCUGUGAGUGCCCAACCCUAUCCCAGAGACCUUGAUGCUUGGCCUCCCAAUCUUGCCCUAGGAUACCCAGAUGCCAACCAGACACCUCCUUCUUCCUAGCCAGGCUAUCUGGCCUGAGACAACAAAUGGGUCCCUCAGUCUGGCAAUGGGACUCUGAGAACUCCUCAUUCCCUGACUCUUAGCCCCAGACUCUUCAUUCAGUGGCCCACAUUUUCCUUAGGAAAAACAUGAGCAUCCCCAGCCACAACUGCCAGCUCUCUGAUUCCCCAAAUCUGCAUCCUUUUCAAAACCUAAAAACAAAAAGAAAAACAAAUAAAACAAAACCAACUCAGACCAGAACUGUUUUCUCAACCUGGGACUUCCUAAACUUUCCAAAACCUUCCUCUUCCAGCAACUGAACCUCGCCAUAAGGCACUUAUCCCUGGUUCCUAGCACCGCUUAUCCCCUCAGAAUCCACAACUUGUACCAAGUUUCCCUUCUCCCAGUCCAAGACCCCAAAUCACCACAAAGGACCCAAUCCCCAGACUCAAGAUAUGGUCUGGGCGCUGUCUUGUGUCUCCUACCCUGAUCCCUGGGUUCAACUCUGCUCCCAGAGCAUGAAGCCUCUCCACCAGCACCAGCCACCAACCUGCAAACCUAGGGAAGAUUGACAGAAUUCCCAGCCUUUCCCAGCUCCCCCUGCCCAUGUCCCAGGACUCCCAGCCUUGGUUCUCUGCCCCCGUGUCUUUUCAAACCCACAUCCUAAAUCCAUCUCCUAUCCGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-217.40 kcal/mol

Ensemble Metrics

Free Energy: -235.69

Frequency: 0.0000

Diversity: 219.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....))((.............((((((((...(((((.(((...(((.((((..........)))))))....))).))))))))).))))(((((...(.((((((..(((.((((((((........(((((((...............)).)))))((((((......))))))......)))))))).))).........((((....)))).....((((((....))))))..............)))))))..)))))(((((.((...((((((...)))))).....)).)))))..((((((............(((((((((.(((((.(((((........((((((.((.(((((((...(((((.((((((.....))))......)).)))))...)))))))........)).))))))..((((((...))))))....((((.....(((......)))...))))...((((.....)))).......(((((..................)))))...................))))).))))).............((((((((.............................(((...)))......(((....))).........(((.(((((((...))).........((((.....((((((...))))))....))))....(((...)))...............)))).)))...((((((((........)))))))).((((..((.((((..((.(((((......((.((((.(((((....)))))..)))).)).........(((.............))).....))))).))...)))).))....))))........((.......))....))))))))......)))).)))))..........))))))..................................))

Thermodynamic Ensemble Prediction

((....))((............{((((((((...(((((.{({...((,{((((..........)))))))....}}}.)))))))))},)))|,,,....({(.......(((.((((((((......,,(((((((...............))}}))))|(((({......}))))}......)))))))).)))......|||((((....}}}}.....{{{{{{,,,,)))))).............((((((((..{,.(((,((..(,.(((((((.(((((((....,{(({,{{|....((({{{.............{{{{{||,.|}})),,,(((((,.,,..(((((((...(((((((...,((((.,,((((.....)))).}}}}.},.,,,,,...)))))))........,{{|||.....{(((((...)))))}....((((.....(((......)))...)))).,,({,,.....,,,,.......{(((,.................,)}}},...................,}|,|.,,||}..,|,,,,,,...,((((({..............................,{{...}}||,....(((....)))........,,||}},..{{{...)}}.........|||,.....((((((...))))))....,,,}..,,|{{...}},..........,,,...))))))}...((((((({,......,)))))))).|.,},,}})))))},...,,{......,,||}|{{,.{(((({{,.,})))},,)).,,..........|{....|,.......,}),...))))))))))))))..}|.......{{{........|}}....|||.....,,,.}})),..,).)))}..))}}))))).....{{{,.,.........,}}......................))