Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LIN54_0001300

Sequence Length

290 nt

GC Content

0.5000

GUUGUUCCAAAACCAAUCAAUCCAACUUCACAAAUAGUAACUACUAGCCAGCCACAGCAACGGCUUAUCAUGCCUGCCACACCACUGCCACAGAUCCAGCCCAACCUCACUAACCUGCCACCAGGCACUGUCCUGGCACCAGCUCCGGGAACAGGGAAUGUGGGUUAUGCAGUGCUUCCAGCUCAGUAUGUUACUCAGCUACAGCAGUCUUCAUAUGUAUCAAUAGCAAGCAACUCUACCUUUACUGGAACAUCUGGUAUCCAGACCCAGGCACGGCUUCCAUUCAAUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-62.90 kcal/mol

Ensemble Metrics

Free Energy: -68.20

Frequency: 0.0002

Diversity: 69.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.............))))((((((........))).......((((.((....))...))))......(((((((....((((((....((((((..((.............((((....))))(((((((((........))))).))))))....))))))..)))))).((((((....(((.(((.((..((((..(((.........))).....)))).)).)))..))).....))))))..(((((...)))))....)))).)))..........)))

Thermodynamic Ensemble Prediction

((((.............))))(((,,,........|||....,,,|({{{(({...,,...))))......((((({{....{(((((....{{((({,,,,,.,,.,.......((((....))))(((((((((........)))))},)))))...,))))))..)))))|,{,,,(({{.{(((.,,|}||.}|||,.,|||..,....,,|},.....))}},}).,}}..},}.....}}))},..(((((...)))))..,,)))).)))..........)))