Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LIN54_0002700

Sequence Length

632 nt

GC Content

0.4668

GUAGGGUUCUUUCACAGUCUACUCCCGGAACUCCAUCAAAGACCAUAACAAUAUCUGAAAGUGGUGUUAUUGGAUCAACUUUAAAUUCUACAACACAGACACCAAAUAAAAUAGCCAUCUCACCUUUGAAAUCGCCAAAUAAGGCAGUGAAAUCAACUGUGCAGACCAUCACUGUUGGAGGAGUGAGCACAUCACAGUUUAAGACAAUUAUUCCUCUGGCAACUGCUCCCAAUGUCCAGCAGAUUCAAGUGCCUGGAAGCAAGUUUCAUUAUGUCCGACUUGUUACUGCCACAUCAGCCAGUAGCUCAACCCAGCCAGUUAGUCAGAAUCCCAGUACAAACACUCAGCCUCUUCAGCAAGCAAAGCCAGUGGUUGUUAAUACAACCCCAGUGCGGAUGUCAGUUCCAAUUGUCUCAGCUCAGGCUGUCAAACAAGUUGUUCCAAAACCAAUCAAUCCAACUUCACAAAUAGUAACUACUAGCCAGCCACAGCAACGGCUUAUCAUGCCUGCCACACCACUGCCACAGAUCCAGCCCAACCUCACUAACCUGCCACCAGGCACUGUCCUGGCACCAGCUCCGGGAACAGGGAAUGUGGGUUAUGCAGUGCUUCCAGCUCAGUAUGUUACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-138.80 kcal/mol

Ensemble Metrics

Free Energy: -151.28

Frequency: 0.0000

Diversity: 170.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((((................))))))).))(..((....(((((.((.((((...(((((((..((.....................))..))))))).........((.((.(((....))).)).)).......(((((((.....(((((((.......(((((........)))))......)))))))..((((((((......((((((.((((........(((((((........)).))))).(((((((...........)))))))(((((.(......).)))))(((......)))..(((.((.(((..(..(((......)))..)..)))...)).))).......(.((((((....)))))).)...)))).))))))....))))))))..(((..(((((.(....((((((..................))))))......((((....))))).)))))..)))...(((.......)))........))))))).........((..((((.(((...((((((....))))(((((((((........))))).))))))...)))))))..))...(((...))))))))))))))))..)

Thermodynamic Ensemble Prediction

((.((((({{......{{{,......||}}}}),,,,..|||,..,,,,..,{{(((,.,{(((((({.,(({{.{,,,,.......,.....,,..)),,,},.........{{.,{.(({....})}.,|.||{......|||,{{{.....{((((((.,,....(((((.,....,.))))).....,))))))}..((((((((.....{(((((({((({........(((((((........)),})))).(((((((.,,....}...)))))))(((((.{......).)))))(({......))),}}}}.}}}}||.....,((......}}}..{,.,,,...}}..||...||..{.((((((....)))))).,.},))||{},,,,,.,,,)))))))).,(({..{||||......||||||.,,,,.............}}}}},......{(((....}))}|.}}}}}..,}}...(((.......))).},.,,,,))))}}}.,,}}}..,||}},||(,,,,...{{((((....))}|(((((((((,.......})))),,))))),..,)))))},.)),}}|||,..,)},}})))})))),),})