Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LIN54_0003400

Sequence Length

346 nt

GC Content

0.4393

GCAGUGAAAUCAACUGUGCAGACCAUCACUGUUGGAGGAGUGAGCACAUCACAGUUUAAGACAAUUAUUCCUCUGGCAACUGCUCCCAAUGUCCAGCAGAUUCAAGUGCCUGGAAGCAAGUUUCAUUAUGUCCGACUUGUUACUGCCACAUCAGCCAGUAGCUCAACCCAGCCAGUUAGUCAGAAUCCCAGUACAAACACUCAGCCUCUUCAGCAAGGUAUGGUUUCUGAAGUUUGGAAGGAGGCUAUUCUAAAGGAUUGUUCAGAGUUCCUGCCAAAGACUAAAAACUACACAAUUAUGCCAGCUUCUAUGAAAACUGAAGUAGUAGUUAGUAAUGUGCGCUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.40 kcal/mol

Ensemble Metrics

Free Energy: -80.39

Frequency: 0.0000

Diversity: 112.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.(((.....(((.((((.((.....((((((((((((((.....................)))))))))))))).............(((((((........)).)))))((((((((...........)))))))).(((......)))..(((((((....((..((((....((((((.((.(((......)))..((((........))))..)).))))))...))))..)).))))))).....)).)))).)))..)))))))(..((.......((((.((.(((((..(((.(((...)))..)))..))))).))))))........))..)

Thermodynamic Ensemble Prediction

((((.(({.{{,{((({(,{,.,,.{{{{({{{{{{{{|||||......}}}}}},...|{,,,||,,}}}|||||||{{{{,,.......(((((((........))}})))),(((((((.,,....}...)))))))|{(((,{......).}}}||(({....,,,}||||}}.}|||||,..,.,{{......,},.,(((({{,,.,,,||}}.,}}.}})))}..,)))}..))})))),,,.....})}}})),,,)}.)))))))(..{(.,,....((((.((.(((((..(((.(({...,,,..)))..))))).))))))....,}..))..)