Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LIN54_0003700

Sequence Length

484 nt

GC Content

0.4339

AUUGCUAAGAAGCCUCGAACGCCAACCUCUGGUCCAGUAAUCACGAAGCUGAUCUUUGCAAAACCAAUUAAUAGUAAAGCAGUUACAGGACAGACAACUCAAGUUUCACCACCAGUUAUUGCAGGUAGGGUUCUUUCACAGUCUACUCCCGGAACUCCAUCAAAGACCAUAACAAUAUCUGAAAGUGGUGUUAUUGGAUCAACUUUAAAUUCUACAACACAGACACCAAAUAAAAUAGCCAUCUCACCUUUGAAAUCGCCAAAUAAGGCAGUGAAAUCAACUGUGCAGACCAUCACUGUUGGAGGAGUGAGCACAUCACAGUUUAAGACAAUUAUUCCUCUGGCAACUGCUCCCAAUGUCCAGCAGAUUCAAGUGCCUGGAAGCAAGUUUCAUUAUGUCCGACUUGUUACUGCCACAUCAGCCAGUAGCUCAACCCAGCCAGUUAGUCAGAAUCCCAGUACAAACACUCAGCCUCUUCAGCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.80 kcal/mol

Ensemble Metrics

Free Energy: -101.68

Frequency: 0.0000

Diversity: 116.70

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((((.((...((((.((.(((((((((.............(((((..((((((..............)))))))))))...((..((((.......))))..))))))).......)))).))))))((((((...........((....)).((((((..........(((.......(((((((..((.....................))..)))))))......)))..........))))))....(((......))).))))))..(((((((.......(((((........)))))......)))))))...............(((((((((((.........(((((((........)).))))).(((((((...........)))))))(((((.(......).)))))(((......)))))))).)))))).....(((......)))..)).)))).))))..

Thermodynamic Ensemble Prediction

..((((((((.((...{{{{.,,.,,,{{((((((,(((,,.....{((((..((((((..............))))))))))),}.||},||{,.......}}}}{{{{{{{{{.,{{{|..|||.||||||({,,,,,{{,,......||},},},.,,{{||,,,....},,||,}}}...,|||||||,,||},,,.................,,..))}}}}}.......,,......,,,.,,}})}....(((......))).}})},,,,{(({(((.,,....{{{{(,,,...,.}||||.....,)))})}}...............(((((((((((,,.......(((((((........)),})))).(((((((.,,....}...)))))))(((((.{......).))))){{{......)))))))).)))))).....,{{......,,}..)).)))).))))..