Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LIN54_0005900

Sequence Length

401 nt

GC Content

0.4115

GUAGUUGUCAGUGUUAAGUUUAGUCAGAGUAUUGAGACUGUUAGGGUAUAGAUAGCAGGCAACGGUGGAAGAUGGAGGCCAUCUUGAAAAAUGAAGAAAAGAGGUGACCUUUGAAGCCAGAGGCAGUAACAGAGAUUGCUAAGAAGCCUCGAACGCCAACCUCUGGUCCAGUAAUCACGAAGCUGAUCUUUGCAAAACCAAUUAAUAGUAAAGCAGUUACAGGACAGACAACUCAAGUUUCACCACCAGUUAUUGCAGGUAGGGUUCUUUCACAGUCUACUCCCGGAACUCCAUCAAAGACCAUAACAAUAUCUGAAAGUGGUGUUAUUGGAUCAACUUUAAAUUCUACAACACAGACACCAAAUAAAAUAGCCAUCUCACCUUUGAAAUCGCCAAAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.90 kcal/mol

Ensemble Metrics

Free Energy: -87.07

Frequency: 0.0000

Diversity: 117.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((.((((((....(((...(((((.(((((...((((((.........)))))).....(((....(((((((.((.((((........))))......((((...(((..((((((((..((....(((...(((....))))))....))...)))))))).)))...))))..(((((..((((((..............)))))))))))...(((.((((.....(((.....(((((.((....)).))).))...))).....))))..))).))..)))))))....)))....))))))))))...(((((((..((.....................))..)))))))........))).....)))...)))))).))(......)

Thermodynamic Ensemble Prediction

((.(.((((.(((((.{((({,,...((((,...{((((((.((((..,..,{.(({{,,(((((((((((((((...))))))),,,...{{{.,...,((((({,,.{(((,.(({{{{((,,((....{{{,,,|||....,))})),,,.},..,)))))}||{|,|{,.|,,}..,((((..((((((..............)))))))))))}).}}}}......,}},.,)))).))))).))}.})))..})...,,.)))}.)))))))))))..,||,}|{{{...,{.(((({..{{...,.},...))))),))..))),......,,,,,,,....))))).)))),,..........{,.,{.{{{....})).,,.)),......}