Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LMTK2_0000500

Sequence Length

554 nt

GC Content

0.4350

GGGAGGCGCCACCUGCUGCAGAAGUUUCCUCAUCUUUUGUGAUCCUGUGUGUGUGCAGUUUAAUAAUAUUAAUAGUGUUAAUUGCAAACUGUGUAUCCUGCUGUAAGGACCCAGAAAUAGACUUUAAGGAAUUUGAAGAUAAUUUUGAUGAUGAGAUAGAUUUCACACCACCAGCAGAAGACACUCCCUCUGUUCAGUCCCCAGCAGAGGUCUUCACACUUUCAGUACCAAAUAUUUCACUCCCAGCUCCCUCGCAAUUCCAGCCUUCUGUAGAGGGAUUGAAGUCUCAAGUUGCCCGCCACAGUCUAAACUACAUACAGGAAAUUGGAAAUGGCUGGUUUGGAAAGGUUCUCUUGGGAGAGAUUUACACGGGCACUAGCGUAGCAAGAGUCAUCGUGAAGGAGUUAAAAGCAAGUGCCAACCCAAAGGAACAAGAUACUUUUUUGAAAAAUGGAGAACCUUACUACAUUCUUCAGCAUCCAAAUAUUCUUCAGUGUGUUGGACAGUGCGUAGAAGCGAUUCCCUACCUCCUGGUGUUUGAGUUCUGUGACUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-130.90 kcal/mol

Ensemble Metrics

Free Energy: -142.78

Frequency: 0.0000

Diversity: 205.64

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..(((...((((..(((..((((((((((.....))))(((((((((((((((((....(((((((...)))))))))))))..(((.(..((((......)))).))))...((((((....(((((((((.(((.....((.((.(((((....))))))).))......(((((.....((((((((........)))))))))))))............................(((.(((((((((............))).)))))))))..)))))))))).))......))))))...)))))))))))....))))))..)))...(((.((((((((((((((.............((((((.((.((((.....(((...)))....))))...)).))))))..))))......(((((.....)))))......)))))))))).)))((((.((((((((.(............).)))))))).)))).))))..)))..))))((((....)))....(((((....))))))

Thermodynamic Ensemble Prediction

(({{{,(((...{(((,.{{{..{,(((((((({,,,,||}}{{((((((((((((((({,{{(({((,....}}))))))))))}..|{({(,.{(((,,,,..}||}..|||{,.(({{((,{,,({,{{||||||{|..,,}||.{(.(((((....}}))}}}.}..,}|,,(({({,....{(((((((........))))))))}}}})..,,....,},......,,..,,.,{,,(((.{{((({{({....,,,,,..,|||.}}))}}|||..}}})))}}}}.})}...,,))}}}|...}}}}}}}}))}...,)}}}}},|)))|..{{{.{{{{{((({{{|||,,.,,........{(({{{.{{.{{||,,,,,{{,..,))).,,,))),...)).})))))..))||,.{..,({{((..,,,}}}}}......|}}}}}}}}}.}}}||||.{|||(({({({{{{{{......),))}))))).,}))}}}))..))).})))}((((....)))}...|||||,,,,}}))))