Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LPHN3_0027600

Sequence Length

431 nt

GC Content

0.4826

CACAGUGAUGCGGUCCAUGACCUCCUUCUGGAUGUGAUCACGUGGGUUGGAAUUUUGCUGUCCCUUGUUUGUCUCCUGAUUUGCAUCUUCACAUUUUGCUUUUUCCGGGGGCUCCAGAGUGACCGUAACACCAUCCACAAGAACCUCUGCAUCAGUCUCUUUGUAGCAGAGCUGCUCUUCCUGAUUGGGAUCAACCGAACUGACCAACCAAUUGCCUGUGCUGUUUUCGCUGCCCUGUUACAUUUCUUCUUCUUGGCUGCCUUCACCUGGAUGUUCCUGGAGGGGGUGCAGCUUUAUAUCAUGCUGGUGGAGGUUUUUGAGAGUGAACAUUCACGUAGGAAAUACUUUUAUCUGGUCGGCUAUGGGAUGCCUGCACUCAUUGUGGCUGUGUCAGCUGCAGUAGACUACAGGAGUUAUGGAACAGAUAAAGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-126.80 kcal/mol

Ensemble Metrics

Free Energy: -132.49

Frequency: 0.0001

Diversity: 109.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((((...(((((.((......)))))))...))))))))((.(((....((((.(((.(((....((((((.((...(((...........)))....)).))))))....))).))).))))..))).)).((((((((((..(((((((.....((((((((.((.((.......((((((..(((.......)))....))))))((....)).......)).)).))))))))............((((((((((.((.(((...))).))..)))).)))))).........)))))))))))))))))...((((....))))(((.....)))(((((((((.....((((((....((((...((((((((((((...)))))))))).))...))))..))))))..))))))))).

Thermodynamic Ensemble Prediction

(((,((((({{{(((((,({{{{{{,,||||||{{.,|||||||((.(((....((((.(((.(((....((((((.((...(((...........)))....)).))))))....))).))).))))..)))}))}|(((((((((,.(((((((.....((((((((.((.((.,.,,,,{,((((,.,{{.,.,...,}}....,}}}},{{....)).},,...)).)).)))))))}............{(((((((((.{(.(({...})).))..)))).)))))).........))))))))))))))))}...||||,}}}))),|,|}}}...||,,{{{{{{|,,...{{||||....{|{|,}.||||||||((({,,,|}|}|}|}}}.}|.|.)})},}))}))}..)}))))}))}