Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_LRP1B_0028600

Sequence Length

410 nt

GC Content

0.4561

AAUUCUUUUCUGGACAGACUGGGAUGCAAAUUUUCCUCGCAUUGAAUCUGCCUCUAUGAGUGGUGCUGGGAGAAAAACCAUCUAUAAAGACAUGAAAACUGGGGCUUGGCCUAAUGGACUAACUGUGGACCACUUUGAGAAAAGGAUAGUGUGGACAGACGCCAGGUCAGAUGCUAUUUAUUCAGCCCUCUAUGAUGGAACAAACAUGAUAGAAAUCAUCCGAGGUCAUGAAUACCUUUCCCAUCCCUUUGCUGUGUCUCUAUAUGGGAGUGAAGUCUACUGGACAGACUGGAGGACCAACACAUUGUCCAAAGCCAAUAAGUGGACAGGGCAGAAUGUCAGUGUGAUUCAGAAAACCAGUGCACAGCCAUUUGACCUUCAGAUAUACCAUCCCAGUCGCCAGCCACAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.60 kcal/mol

Ensemble Metrics

Free Energy: -113.56

Frequency: 0.0000

Diversity: 124.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((..((((.(.((((((((((((..(((((.(((((((((.(((((((........((.((((((.(((....(((((...................((((((((....((..(..(((((....(.((((....))))))))))..)..))...)))))))))))))...))).))))))))(((((.(((.......))).)))))........(((((.......)))))((((((......((...))......))))))(((..((((.((((.....)))).))))...)))..((((((...........)))))))))))))...)))))))))....)))))....)))......((((((...)))))).....))))))))))))))....)))

Thermodynamic Ensemble Prediction

,...{{|,,((((.,.((((((((((,,..{((((.(((((((((.(((((((((,{,,{((((.,(((,..,....|||{{{,,,.|||{{,,.....,{{((((((((,...{(..(..{{{{{,..||,|||,..,.,,,||}}})),,)..}}...}}}}}))}.,,,{,,...{,{{{||}{{(((((.(((.......))).))))}...,....||||{..,},,,),}}},{,|||}}|......,}}}}}.,,,}}))}}|{|..((((.{{{{,,.,.)}|}.},,}...)}),))}))),..}|||....})))},.}))))))...)))))))))....))))}...,}||...,,.((((((...))))))....}))))))))),}}}}....)))