Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_MACF1_0016000

Sequence Length

250 nt

GC Content

0.3920

GUGUGGAUUGAAUUUGGCCGAAUUAAACUGCCUCAAGGUUAUCACCCUAAUGAUGUGGAAGAAGAGUGGGGAAAGCUCAUCAUAGAGAUGCUGGAACGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCUCAGCCCCUGGAUUGAGGAAACUCGGGCACUAAUAGCACAGUUACCCUCUCCAGCCAUUGAUCAUGAGCAGCUCAGGCAGCAACAAGAGGAAAUGAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-37.49 kcal/mol

Ensemble Metrics

Free Energy: -42.72

Frequency: 0.0002

Diversity: 55.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..((((......(((.(.......).)))....))))..)))(((.(((((((((..((.((((.......)))).))........(((((..........................................................)))))..(((((..((((.((((.(.((.......)).)))))..)))))))))))))..)))))..((.((....)).))..............)))

Thermodynamic Ensemble Prediction

(((..({(({{....(((.{.......}.)))}}},,}))..)))(((.,{..{.{,...,..{..((((....((((((......{{{((((((..{{{...................................................{{((({{.,,}}.,,|||,...||,{|{|,,{....,,..))),.})))))))))),))).,}.))))))..))}).,)..}..},.......,,.)))