Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_MACF1_0034800

Sequence Length

406 nt

GC Content

0.4557

GAAAGGGAAAUGGAGGUGUAAACCCAGAGCCCUUCAGAGCAACUCAGAAAGGGAGUUAAAGGAUCUGACCACCUUGGUCAGUCAGGAGCUGGAGUGUGUGAAUCAGAUUAUCAUCAGCCAGCCUCAAGAAGUUCCUGCUCAACUGUUGAAGGCUCUAGAGAAAGAUGCCAAGAAUCUUCAGAAGUCUCUCAGCUCUGUGAGUGACACUUGGAAUUCCAGGCUACUCCACUUCCAGAAUGCUGUGGAAAUAGAAAAGACUAAAGUGUUAAAUCAGCACACACAGCUAGAAGGCCGACUUCAAGAUCUGAGAGCCUGGGUUGGCAAUAAAAAUCUUAUUCUGAACAGCAAGGGAUCUAACAGUGAAAUAGAUGUUGACAGCCUGAACCUCUGCCUCCAACAGUAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-106.60 kcal/mol

Ensemble Metrics

Free Energy: -116.07

Frequency: 0.0000

Diversity: 119.39

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((...(((.(.......))))...)))))......(((((.......))))).......(((((((...))))))).((((((((((..((.((((.........)))))).)))))..........)))))(((((((((((.((((...((((.(((((.......)))))....((.(((((((.((((((((((...(((((....))))).)))).))).........((((((....(((......)))..(((((.....))))).))))))..((((.....)))).))).))))))).))((((((.((((....((((..(((.......................)))..)))))))).))))))....)))))))).))))))).))))

Thermodynamic Ensemble Prediction

.,,((((...(((.({{....})))}...)))}||.{{{.,{|||.....,,)}}}}....({.(((((({...}))))))}|.,(((((((..{({({{(......}}.,))),,.)))))}))......})))).(((((((((((.((((...((((.{(((({{{,,..,},|{{{{..(,({(((({.{{{{||||{|,,.{{|||....|||||,|,|||,}},,,,,....((((((....,{(.....,|},..{{{||.....}}}}}.))))))..((((.....)))).}}}.}})))))}))}|||||}||,,.....|||}.}}|}}....,,.,{|..,||{,{{.......,},))))).,,,)))....)))})))).))))))).))))