Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_MBNL1_0008900

Sequence Length

679 nt

GC Content

0.3122

GUGGGUGAAAAGAAUACAGACUUUUCCUCCAGGAUGAGUCAUAGAUUUUAAAAAUUAAGAUGAUAUUUACCAUUUAGUCUACAGUUUUGAGAAUGAUAGUUCUAUUGCUUGAAAGAGUUAGAUACCUUCCAAAAGAGAAAAGGAAUGUAAUGGGAGGAGAGAUAGGCAACAGAAAACAAGCAUCUGUCCCUUAUGGAGAAAAAUGUAUUUUUAACAGAUACUAGAGAAUAUAGAAGUUGCUAUAUCAACAAAAAAUUUUUAUUUGCUCAAACAGGUGGAUAAGCCAAUGUGUAUUUACUGAAUAAAUGAGUAUGUGCUAGUGGAAAUCAAUGAGUGAGUGAAUAAGUGAACAAGUAAAUGGAUAAACUCAGUAGGUAACACAUUAUUCUUCCUGUUUAUUAUUUUUAGGAAACAAUACUUAUUUGAAAGUAUUACAAAGAAUUCACUUAAAGAACCCUGGUGAAAUUCCUCAUUUUCUCUUGUGGUAAUAGGCAGUUGUUAUAGUACAGUCAUAAUCUUUUGGUUGUAAUUUAUUAUGUAGGUUGAAUUACUCUACAUUUACAGAGCUUUUGGGAAUCAGGAGAUGAGAAAACACAAAUAAUAAGCAAAAGGGCAGUUAGUACUAUCCUAAAAAUAAACAUUGGCCCAUGUAAUCACAUCCUAAAUAAAAUAAACUGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-130.50 kcal/mol

Ensemble Metrics

Free Energy: -142.10

Frequency: 0.0000

Diversity: 253.53

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((....((.(((((((((.(((....))).)))))....(((((((...)))))))..((((((((.....((((((..((((((((((((....)).))).)))))))..).))))).(((((((...................)))))))....(((((..(((((.........)))))..)))))..........((((((.....))))))..(((...(((((((((...............)))))))))...))).....)))))))).((((((((.(((((...((..(((((((....((((((.((...((..((((((((((((((((((..........(((......)))........))).))))))((((((...........))))))..(((((((......))))))).......)))))))))..)).))))))))......)))))))..))((((((((((((....)))))))..)))))..((((((....))))))..((((((((....(((...(((((((..(((..((((...))))..)))..)))).)))...)))....))))))))....((((.(((....))).))))..))))).))))))))...)))).)).)))))..................

Thermodynamic Ensemble Prediction

{{(((({,,,,((,({{{(((((.(((....))}.}))))....(((({{,...})}}|||,.,,,,,,|}}}},.((((((..((((((((((((....}},))).)))))))..)}})))).({(((({..........,,,,..,..||||}||,.,{(({{({.{{,,,......,,,)))})}})))))}},},,...}||||||}}...,,,,,}..(((...(((({{{((.,,...,,.......}}}}}}}}},,,}}}{,,{{||,|{||,.,{{((((({((((((({{(...,,{,||||,.{(((,(|||...{{..{{,{||||||||||||||.,|.,,}}.,||.......)))}}},}}..)))}))})))|{|||||||.,{,,,{{|||||,..(((((((......))))))).....{{|||||||,,..|,.,,}})))),,})}}|||||}},,||,{({{{{{{{{({{..|||||||{,(({|,,,,..,((,,,||}||||.,,{{,,,(((({(((,....,||,||}}||,..{{{,.,,||||..,,}}})))),))},..,,,....}},}}}},|,,,||||.{{{..,,))).)))),,}}))},}}}}),))),})}}..}},}}}}}..................