Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_MYH11_0010800

Sequence Length

705 nt

GC Content

0.6071

GAGCUGGAGAAGCUGAAACGGAAGCUGGAGGGUGAUGCCAGCGACUUCCACGAGCAGAUCGCUGACCUCCAGGCGCAGAUCGCAGAGCUCAAGAUGCAGCUGGCCAAGAAGGAGGAGGAGCUGCAGGCGGCCCUGGCCAGGCUUGACGAUGAAAUCGCUCAGAAGAACAAUGCCCUGAAGAAGAUCCGGGAGCUGGAGGGCCACAUCUCAGACCUCCAGGAGGACCUGGACUCAGAGCGGGCCGCCAGGAACAAGGCUGAAAAGCAGAAGCGAGACCUCGGCGAGGAGCUGGAGGCCCUAAAGACAGAGCUGGAAGACACACUGGACAGCACAGCCACUCAGCAGGAGCUCAGGGCCAAGAGGGAGCAGGAGGUGACGGUGCUGAAGAAGGCCCUGGAUGAAGAGACGCGGUCCCAUGAGGCUCAGGUCCAGGAGAUGAGGCAGAAACACGCACAGGCGGUGGAGGAGCUCACAGAGCAGCUUGAGCAGUUCAAGAGGGCCAAGGCGAACCUAGACAAGAAUAAGCAGACGCUGGAGAAAGAGAACGCAGACCUGGCCGGGGAGCUGCGGGUCCUGGGCCAGGCCAAGCAGGAGGUGGAACAUAAGAAGAAGAAGCUGGAGGCGCAGGUGCAGGAGCUGCAGUCCAAGUGCAGCGAUGGGGAGCGGGCCCGGGCGGAGCUCAAUGACAAAGUCCACAAGCUGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-240.70 kcal/mol

Ensemble Metrics

Free Energy: -252.13

Frequency: 0.0000

Diversity: 223.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((...(((((.........(((((.........)))))..(((((((.(((.....)))..((((((((((...((((..(((((.....(((((((..((........))...)))))))(((.......))).)))))..)))).....)))..............(((.((......)).)))..)))))))(((.((((((...((((...))))..(((((((..(((((((((.((((.......(((((...((....))......)))))......)))).)))))..........((((..((.....))...)))).......((((...(((.(((((((((.......((((...(....)..))))......))))))))............).)))..)))))))).))))))))))))).))).......(((....)))))))))).((((...)))))))))...))))))...(((((....))...)))...........(((....)))..................(((((((.((((.(....).)))).)))))))....((((...(((((...........((..(((.(.(((.(.(.(.(....((((((.......)))))).....).).)).)))).)))....))...........)))))...))))..

Thermodynamic Ensemble Prediction

{{((({....||{{,........{((({((({{....|{{({,,(({{{.,,{|.,,.||}}}},|||||}|(({,....}}}.,||{||....|||{{|{{{((.....,,.}},{{|}|||||{{{,,((({{(((((({((({(({{...,}}).||}..........{({(({,......{{{|||..|||||||{{{.,,,{{,...|||||}},.,,.}||||||||||.||(((((|({{{.......((((,...{(....)),....|)))}|..,..})))).)))))..........((((..{(.....))...)))).}}}},.{{{{,,.,,,}|{(((((((.......((((...(....)..))))......)))))))}.........,|||||||{.||||||||||||}},,}}},||,|}|.....{,(((....)))})},,...{|||,..},,}.})))}}})..}))}.},))))}.,,|},..})}...........{((....)))............,}},}.|||||||,|||{,|,,,,).)))).}}))}))}}..((((...(((((.........,.,{..(((.(.(((.(.{.(.(,...((((((.,...,.))))))..},.).}.}).)))).)))....)),..........)))))...))))..