Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NLGN1_0003500

Sequence Length

250 nt

GC Content

0.3320

GAUAUAGACCUGCAGCUAACUGGAUUUGAUUUAUAAGAGAGAAAUCUGCAGUCAAUGCCCACUCUUGCCACACUGCUAAUAUGGAAAACAGAAUGUUCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUGUGGUUACCCUUAAGGGCUUGGAGUCCUCACCUCUAGGAUGACCUUGCUCUGUAACAUGUUCUUCUUACUGGAGACUGUUUUCUGUUCUUGUUUAUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-38.30 kcal/mol

Ensemble Metrics

Free Energy: -42.22

Frequency: 0.0017

Diversity: 37.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...((((..(.(((....))).))))).)(((((((.((((.....(((((....((........))...)))))....(((((((((((................................................................(((((.....(((((..((.(((((.......)))))..))..))))))))))....(((((.....)))))))))))))))))))).)))))))

Thermodynamic Ensemble Prediction

{,{.(((({,,.{({....}})|,}||},}{({{{({.{{{{,,|,.(((((....((........))...)))))....,{(((((((((................................................................(((((.....(((((..((.(((((.......)))))..))..))))))))))....(((((.....))))))))))))))))))}}.}))))))