Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NLGN1_0003900

Sequence Length

250 nt

GC Content

0.2920

GAUAUAGACCUGCAGCUAACUGGAUUUGAUUUAUAAGAGAGAAAUCUGCAGUCAAUGCCCACUCUUGCCACACUGCUAAUAUGGAAAACAGAAUGUUCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUAAAAUAAGGAUAAUAACAGUACCUACCUAAUAGGCGUUUGAAAAGAAUAAAUGAGGCCAUUUAUGUAAGGUUGUUCUCUCAGUGCCUGGAAUAUAAUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-28.50 kcal/mol

Ensemble Metrics

Free Energy: -33.58

Frequency: 0.0003

Diversity: 35.20

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((.(((.(((((....((...((........))...))....)))))))).))))(((......((((((((.......(((.((((((....)).........................................................................((((((.(((..(((.((..............)).)))..))).)).)))))))).))))))))..))).......)))

Thermodynamic Ensemble Prediction

(.(((.((,{(((((....((...((,.......,},..))....)))))))).))))(((......((((((((......,{,..,,{{...,}}},............................................................{{{.{,,{{{...((((((.(((..(((.((..............)).)))..))).))},))))))).)}})))))..))).......)))