Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NLGN1_0012700

Sequence Length

524 nt

GC Content

0.3569

GGAGGUCUGACUGAGUUAUAAUUUUGGAAAUCAUCAGUAUGUGAUAGAAGUUGAAGUCUGAGGUAUGGAUAAGACAUUUUAAAAGCUUUGUGGACUGAGAAGAAAAAAGGACAAAGGAUAUGAUUUGUGGAAUUUGGAUAUUCAAAAAGCAAUAAAAAUGAGAAAUAAUAGUAUAAUUAGGACAGGAUGUUAUCAUCAAAACUAAUAAAGAUUAUAUGAGGUAAAGAAUAGCUGAAAAUGUUGAAUUAUGUUGUCAAGCAAUACAAAGUUCAAAAGGUGUCUAAUUGGCUUGCCAAUUAGUCAGCUACAGACACCCAUUCCUGGUGAACAGAGGUGGGCAGACUUGGAAUUCAGUUUUCUAGUGCAUUCAGGAGUAAAUGGUAGGUGGGUAGGUGAGGAAGUGAAUGAAAAUUCUAUAAAAGCAUGGGUGUGCAGAGAUUAAGAGGUCGGUAGCUAGAAAUCAAGAAAACAGUUUUAUCAGAGAGACUACAACACAUUUAUCUCUGCACAGGAGUGAAUGGUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.70 kcal/mol

Ensemble Metrics

Free Energy: -111.53

Frequency: 0.0000

Diversity: 169.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((((..(((((...(((((((.(((((((.....(((........((..((((((((((.((((........))))...)))))..)))))..))..........)))......))))))).))))))).....))))).......................(((((...(((((.....((((....))))....)))))....))))).(.((.((.....)).)).).....(((((((.((((((...))))))...))))))).((.((.((((((((....)))))))).)).)).......((((((.(((.....))).)))))))))))))...(((((.(((((((.(.((((((........)))...))).)))))....))).)))))......)((((.....(((...(((((((((((.((...((..((((((.......((((......)))).......)).)))).))...)).)))))))))))...)))....))))

Thermodynamic Ensemble Prediction

(,,{(((({,(({({{{,{,,{{{{,...,{{{{||,..,||}}|.|,,,||,,,{((({{{,,.,,|,,.,{{({{(({...,{(((({({,,{{..............{||{{....,,,,||||}.,,,||{,...,}))}.,..,}........,........{{{{{...(((((.....((((....))))....)))))....))))).|.,{.{,.....}},)).,...,,|{{{{{{.{{{{{|...))}}))}},))))}},.||,||,((((((((....)))))))),)).)).,...,.((((((.(((.....))).))))))))}}))}.,.{{{((.{{{{{{|.|,{{{{{{........,,,,.,,))}})}}.,,,}})),)}))).....,)((((.....(((...(((((((((({.{(,.,((..((((((.......,{((......)))).......)).)))).}}.}.)},)))))))))))...)))....))))