Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NLGN1_0014300

Sequence Length

546 nt

GC Content

0.3901

AAAGUAAUGCUCCCUUAAGAUCCAAAUGCAUCAACCUAGAUACCCUGACUAAUUUUACAGGAGUUUAAUGCACUACUAGAACAUUGAAAUCUGUGAAACAGCUCCACUAACUUGAUUUUUAAGUGAAACUUCUGUUGUUUAAAGGAAGCAGUUUACUUUUAAAGUUGUUAAAAUAGAGAAAUUAAUUGUAUAAAUAGUAGCAAAUGAUGAUCAGAAAAUAUUUGGACAACAUGAGGAAAUAUAUAUAUUUAGACUUUUAGCUUCUUUCUUUCUUUCUUUUCUUUUUAUUUAUUUAUUUAUUUUUUUUGAGAUAGUCUCUCUCUGUCCCAGGCUGGAGUGUAGUGGCAUGAUCUCGACUCACUGCAGCCUCCGCCUCCCGGGUUCAAGCAUUUCUCCUGCCUCAGCCUCCUGAGUAGCUGAGACUACAGGCAUGUGCCACCACGCCCAGCCAAUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACCAUGUUGGUCAGGCUGGUCUCGAACUCCUGACCUCAUGAUCUGCUGGCCUCAGCCUCCCAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-117.30 kcal/mol

Ensemble Metrics

Free Energy: -127.86

Frequency: 0.0000

Diversity: 175.65

Structure Visualization

Structure Prediction

MFE Structure Prediction

......((((.................)))).......((.((((((.((.......((((((...(((((.((((((..(((((((..(((((..(((((((.............((..(((((((.(((((..........)))))...)))))))..)))))))))...)))))....)))).))).....))))))............((((((((..((((......(((((((...........(((.........)))............))))))).......))))..)))))))).((.(((((.......))))).))(((((.((((.(((.(........).))))))).)))))((((.....)))).....))))).)))))).(((((....)))))..(((((((.(((((((.((.((......)).)))))......)))).)))))))..)).)))))).))..((((..(((((((..(((.....)))))))))).))))....((((....))))........

Thermodynamic Ensemble Prediction

...{,.((((.................)))).......((.(((((({({{,..,((((((({((,{{((,.(({,,|,.{||||||..|||||,,{((((({......,..,{,.{{,.(((((((.({{((,|{.....,.))})).,.)))))))..}}))))))}...|||}|,,.,||}},|}}.....}}}}}},|,,{{{{{{..((((((,,..,(((.,....((((({{...........|,,.......,,))}.....,,,...}))))),.}}},},,)}),..}}},,,,..{(.(((((.......))))).}}((((((.((((.(((((((,........,,.,{{|{{{{{{,{,,,..,))}},...|||...,,{{||,((((({..,,,}})..))})))....}})},.,))))))).))))))))))}}}})))})).,.)))))..,,.)))))).))..((((..(((((((..({,.....,),))))))).))))....((((....)))),.......