Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NLGN1_0016000

Sequence Length

581 nt

GC Content

0.4303

UGACCCAAAUCAACCAGUCCCUCAAGACACGAAAUUCAUUCAUACCAAACCCAACCGUUUUGAAGAAGUAGCAUGGACCAGAUAUUCCCAGAAAGACCAACUUUAUCUCCAUAUUGGAUUAAAACCAAGAGUUAAAGAACAUUACAGAGCCAAUAAGGUGAACCUCUGGUUGGAGUUGGUACCUCAUCUGCAUAAUCUCAAUGACAUUUCUCAGUAUACCUCUACAACAACUAAAGUGCCAUCAACUGACAUCACUUUCAGACCUACGAGAAAAAAUUCUGUACCUGUCACGUCAGCCUUUCCCACUGCCAAGCAGGAUGAUCCCAAACAACAACCAAGUCCAUUUUCAGUGGAUCAAAGGGACUACUCAACAGAGCUGAGUGUCACUAUUGCAGUUGGAGCAUCACUGCUGUUUCUGAACAUCUUGGCCUUUGCAGCCCUGUACUACAAAAAGGAUAAGAGGAGACAUGAUGUUCACAGGAGAUGCAGCCCUCAGCGCACUACUACCAAUGAUCUAACCCAUGCACAAGAAGAGGAAAUCAUGUCCCUCCAAAUGAAGCACACUGAUUUGGAUCAUGAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-117.70 kcal/mol

Ensemble Metrics

Free Energy: -129.29

Frequency: 0.0000

Diversity: 184.55

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((((((((....(((......)))......(((.((((....((((......)))))))))))((.((((((........................(((((.(((....((((.......))))))).))))).......(((((((.....)).....)))))(((((((((((((...((.(((((.........(((((...(((((..................((((((...((....))...))))))..(((.(((.((((....)))))))...)))..(((..(((((.((((((.......((((...................)))).....))))))...))))))))..(((....)))))))))))))....))))).))((((((((....(((((((.....(((((.(((((.................))))).)))))))))))))))))))).....((.(((.((.....)))))))..)))))))..)))))))))))))).....((((..........))))..............)))))))).))).....

Thermodynamic Ensemble Prediction

(((.((((((((....(((......)))......,{{.{{{{....{{{{......))))))}}}}}{{.((((((...((({.,,..{,{{...{{{{{(((((.{((,...{{||,......}}}}}}|.},,,,.......,,{{(((.....}},....)))))}|||||||||||...,,,,|||{{.........||{,{,,,{{{{((,......},,.....,,{{((((...((...,|}...}}}}}}.}|...{((,{(({....})))))},{{|{.,,((({.,,(((,({,((({.{(({{(((({.{{..,{{{,........||||{{|...)))))}}.,,||}{{{.{((({.....,.)))))))).,,..,||||,|||.,,,,}}})))}|}}}.,}|,|}||}||.{|||,}}}}.(((...........)))...,}|))}}}||})))))}|}}}}}||,|||.{{.....))))),,.,}.}},}}.,))}...)))))),}.....({((........,.))))....,,........)))))))).))).....