Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0002100

Sequence Length

1025 nt

GC Content

0.3707

UGCCAAAUCAAGAAUGCAAUCCUAUUCACAAUAGCCGUGAAAAAUAAAAUACCUAGGAAUACAGCUAACCAGGGAGGUGAAAGAGCUCUACAAUGAUAAUUAGGAAACACUGCUAAAAUAAAUCAGAGAUGACACAAAUGCAAAAACAUUCGAUGCUCAUGGAUAGGAAGAAUCAAUAUUGUUAAAAUGGCCAUACUGCCCAAAACAAAAUAAAUAUUCAAUGCUUUUCCUAUCAACCUGCCAAUGACACUCUUCACAGAAUUAGAAAAGACUGUUCUGAAAUUCAUAUGGAACCAAAAAAACAGCCUGAAUAGCCAAAGCAAUCCUACACAAAAAGAGCAAAGCAUCACAUUACCUGAUUUCAAACUAUACUUCAAGGCUGUAGUAAUCAAAACAGCGUGGUACAGGUACAAAAACAGUGACAUAGACCAAUAGAACAGAAUAGAGAGCCCAGAAAUAAAGCCUCACACCUACAACCAUCUGAUCUUCCACGGAGUUGACAAAAACGAGCAAUGGGGAAAGGAGUUCCUGUUCAGUAAAUGGUGCUGAGAUAACUGGCUAGCCAUAUUCAAAAGAUUGAAACUGGACACCUUUGUUACACCAUAUACAAAAAAUUAACUCAUGGUGGAUUAAAGACUUAAAUGUAAAACCUAAAACUAUAAAAACCCUUGAAAACCUAGGAAAUACCAUUCUGGACAUACGCCCCAGCAAAGAUUUCAUGAGGAAGAUGCCAAAAGCAAUGGCGACAACAACAAAAAAUUGACAAAUGAGACCUAAUUAAAGAGCUUCUGCACAGCAAAAGAAACUAUCAAUAGAGUAAGCAGACAACCCACAGAGUAGGACAAAAUAUUUGUAAAUGGUGCAUCUGACAAAGGUCUGAUACCCAGAAUCUAUAAGGAACUUAAAUUAACAAGCAAAAAACAACUCCAUUAAAAACUGGGCAGAGGACAUGAACAGACGCUUUUCAGAAGAAGACAUAUACUCAGCCAAUGAGCAUAUGAAAAAAUGCUCAACAUUGGCUGGGC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-184.50 kcal/mol

Ensemble Metrics

Free Energy: -203.89

Frequency: 0.0000

Diversity: 305.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((...((((.((....((((((((....((((.(((....................))).))))....(((..((......((((((...(((((((((((...............(((((((.((((.....((((......))))...(((((.((..(((((.((((...((((........(((......)))........))))...))))..((((((..((((((..((((((((((...((...((((..((....))..))))...))...)))).)))...........)))..)).))))..)))))).)))))..))....)))))........))))..)))))))..........(((((((((((..........)))))(((((..((((.........((.......))...............(((.((...........)))))..))))...))))).((((((.(((..(((((((.......(((((...((((......))))))))).(((.((((((.(((.(.....((....(((..(((((....)))))..)))...))..).))))))))).)))......))))))).))).))))))...((......))......................))))))..(((..(((((......((((.........)))).....)))))...))).....((((.......))))............................)))))).......(((.(((...))).)))....))))).))))))......))..)))...))))))))....)).))))....))))((.((((......((((..(.(((((.........(((..........................)))........))))).)..)))).....)))).))(((((....)))))......((((((((((((((((........)))))))...))))))))).

Thermodynamic Ensemble Prediction

,((({...{{{{.{{....((((((((,,..{{{{.|{|,,............}},,..,}}.})}}....(((,,((.....,(((((,...(({{{{(((({......|{||.......,{({{.,{|||..,.{(((......)))}.,.||({|.{{,,(((((,(({{..,({(((({.....(((......)))...,}}},.}},...)))}..{{{|||,,|||||{..((({{{{(({...{{,,,,{{(,,{,,,......||||||||,...||}|,||}.,,........}}|,,||,.}}|,.}}})),.}}}}}..},....}}}},..}},},...,,.,}||}}|,....,,,,,,{,,,,||{|||,},.......,}})},||||.,||||.........))..},},,},,..,,,,,},}....(((.((...........))))).....,...,,..||||{{{{.{{,,|((((({........,,{{,.{((((,...{,,|||||||||{((,.(((((({(,{{....,}||}..}|||,.(((({....})))),,))),},||{{{{|||||||||.|||,,....,},,|||||}||}||||,.,,{,......}}.....................,||,|....{{{,}|{{{{.,..,,((((.........))))....,})))).,,}))..,.|((((.......)))),..............}},.,..,}},,.|||}}},...,.,||{{(((...}},..,}....,,}},.,,}}))..,,,,)}..}}}...)))))))}....,,.)))),,.,))))|{.{{||,,},,,|(((,.,.{{|||........||||,,,,.....................,))).,,.....))))),}..}}}}.,...)))}.})(((((....))))}......((((((((((((((((........))))))}..,))))))))).