Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0006000

Sequence Length

250 nt

GC Content

0.3320

AGAAUGACUAAUAGUAGCAGCUCCCCAAGCCUUCUAAAUGACAGUGCCAAGCCAUAUUCAGCCCAUGAUCCUCUAACAUCACCUGCUUCAUCCUUGUUUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUUUAUUUUCUGAUCUUCUCUUUAACCUCUUCCUUUCCCUUAGCACCUGCUUCCAGUUAAUCACCAAUAGUGGUUUUUAACCUACCAGAUGUUGCCACAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-15.50 kcal/mol

Ensemble Metrics

Free Energy: -18.80

Frequency: 0.0047

Diversity: 47.77

Structure Visualization

Structure Prediction

MFE Structure Prediction

.............((.(((((.......((((((.....)).)).))((((........(((...((((........))))...))).....))))..............................................................((((.............................(((....)))....(((((..((((....))))..)))))....)))).))))).))..

Thermodynamic Ensemble Prediction

,{...,,,,....((,({{(({......{{{{{{.....}}.}|,|},{{{........(((...((((........))))...)))..,..,,}}.................................................................{|...........................,{((,.|||}}....(((((..((((....})))..)))))....}}).,))))}.}}..