Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0009300

Sequence Length

461 nt

GC Content

0.4924

AGACGGAGUCUUGCUUUGUCACCCAGGCUGGAGUGCAGUGGCGUGAUCUCGGCUCAAUGCAACCUCUGCCUCCCAGGUUCAAGCAAUUCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGAUGCACACUGCUACACACGGCUAAUUUCUUUUGUAUUUUAGUAGAGAUGGUGUUUCACCUUGUUGCUCAGUCUGGUCUUGAACUCCUGAGCUCAGGCAAUCUGCCCAUCUCCGCCUCCCAAUGUGCUAGGAUUACAGGCAUGAGCCACCGUUCCCGGCCAAAUAUAAAUUUUAAAUUACCAAGGAAGUAUCGCCUGGGGAUGCUGGAGGAGAGGCUAGUUCCGAUGGGAUCAAAGGCACGAAAAGCAAAGAACCCUAUUGGCUGCCUUGCUGACAGGUGUAAAUCAGGAGUACCCAUCAAUAUGGUUUGGUGGAACAGAGUCACAGAAAACAAUUUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-128.40 kcal/mol

Ensemble Metrics

Free Energy: -136.58

Frequency: 0.0000

Diversity: 153.42

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...))))((((((((..((((((((((((.((((.((((......))((.....))..)).))))))))..((..(.(((..((((.(((((((.((((..(((((.((..(.......)..).).))))).((.(((..((((((((.(((.((((((.(((((((.((.....((((..((((((...(((.....))).)))))).))))......))))))))).)).......((.(((.(((.....(((....))).....))).)))))...........)))).))).))))))))...))))))))).))).))))))))))).)..))((((((.((....((((....(((((.(...((....))...).))))).....)))).......))...)))))).....))))))).)..)))))))..................)

Thermodynamic Ensemble Prediction

.((((((((...)))))))).{{{(((({({{({(((({((((({.,{,{{{{|,..,||,..,.,)))},,,.{((({...(({....})).,.})))|{,,..,.|}}))))}...,.,}}}}.}})})),,}.,.,}}},.(((((({(,({{.,{|||,,|||||((,({..,,}|(((..(((({(,.,({(,,,,,||,,||||||.}|||,,....||||}||||,||.,,,,..{(.(((.(((.....(((....))).....))).))))}...........}}},.}}}.}|||},}}...}))))))}}.}|{|,,||.|{|||.{|..((((((((.{{....((.......))...}}.,))}))))),))))),,))..)))},||...|}}}}}.|..(((((((......)))))))..,.,}}}..,.,.......,,,....