Sequence Details

BLAST PRIMER
Symbol
hsa_PAN3_0010600
Sequence Length
410 nt
GC Content
0.4732
CCAAGGAAGUAUCGCCUGGGGAUGCUGGAGGAGAGGCUAGUUCCGAUGGGAUCAAAGGCACGAAAAGCAAAGAACCCUAUUGGCUGCCUUGCUGACAGGUGUAAAUCAGGAGUACCCAUCAAUAUGGUUUGGUGGAACAGAGUCACAGAAAACAAUUUACAGGAAUGUCGUUGUCUGCUGGGUCUUCCCCUCUUCAUUCCCCCAAGAUUACUCCACAUACUUCUCCUGCUCCCAGAAGAAGAAGUCACACUCCAAAUCCAGCAAGUUACAUGGUGCCUUCUAGUGCCUCUACAUCUGUUAAUAAUCCUGUUUCUCAGACUCCGUCUUCUGGUCAGGUGAUCCAAAAGGAAACUGUUGGUGGGACGACUUACUUCUAUACAGACACAACUCCAGCACCUUUGACUGGAAUG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-102.80 kcal/mol
Ensemble Metrics
Free Energy: -110.84
Frequency: 0.0000
Diversity: 108.40
Structure Visualization
Structure Prediction
MFE Structure Prediction
((.(((........))).)).((.(((..((.(((((.((..((((((((.......((.......)).......))))))))))))))).))..)))((((.....(((((((.(((((((......)))))))...(((.(((((((...((((..(((....))).)))))))).))).)))............((((((((.(....(((.......((.((((...((((((((.(.(((((((..........((((.((.....(((((......))))).....)).))))........)))......)))).).)))))))).)))).)).......)))...).)))).)))).....)))))))......))))...(((((((....)).))))))).
Thermodynamic Ensemble Prediction
((.{((........))},||,{(,(((,,((.(((((.((..((((((((.{{....((.......))...}}.,))})))))))))))}.)}..}}}((((.....{((((((,(((((((,,.,,,||||,||{,.(((,{{{((({..(({((..{{{....))).)))})))).}||,,},.}))),,,...,|||,||||,,....{{{.......((.((((...((((((((.{.((((.............((({.{{.....(((((......)))))......,,))},........||}....,,)))).,.)))))))).)))).)),,,....)))...)}))))}))),.,,..)))))))......))))...(((((({....}).)))))}}.
Back