Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0012400

Sequence Length

559 nt

GC Content

0.4615

ACACCAAAUCCUACUGCAAGCGAGUUUAUUCCUAAAGGAGGAUCAACCUCCAGGCUGAGUAACGUGUCCCAGUCAAAUAUGUCUGCCUUCUCUCAAGUUUUCUCUCACCCAUCCAUGGGAAGCCCUGCUACUGCUGGAUUAGCGCCAGGAAUGUCGUUGUCUGCUGGGUCUUCCCCUCUUCAUUCCCCCAAGAUUACUCCACAUACUUCUCCUGCUCCCAGAAGAAGAAGUCACACUCCAAAUCCAGCAAGUUACAUGGUGCCUUCUAGUGCCUCUACAUCUGUUAAUAAUCCUGUUUCUCAGACUCCGUCUUCUGGUCAGGUGAUCCAAAAGGAAACUGUUGGUGGGACGACUUACUUCUAUACAGACACAACUCCAGCACCUUUGACUGGAAUGGUGUUUCCAAACUAUCAUAUUUAUCCUCCAACUGCACCUCACGUUGCUUAUAUGCAACCGAAAGCAAACGCACCUUCCUUCUUCAUGGCUGAUGAACUCCGACAGGAGCUGAUCAACAGACAUUUAAUAACAAUGGCUCAAAUUGAUCAAGCAGAUAUGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-123.20 kcal/mol

Ensemble Metrics

Free Energy: -135.93

Frequency: 0.0000

Diversity: 182.56

Structure Visualization

Structure Prediction

MFE Structure Prediction

.............((((..(((........(((...(((((.....)))))))).(((((((((((..(((((((((..((((((.........(((((.................(((((((((.((.......((((.((((.((....)).)))))))))).))).))))))........((((((((.(....(((.......((.((((...((((((((.(.(((((((..........((((.((.....(((((......))))).....)).))))........)))......)))).).)))))))).)))).)).......)))...).)))).)))).))))).........)))))).............)))))))))...(((((.............................))))).)))))))))))..(((........)))..)))..........(((((.....)))))((((....)))).(((((((.((.((((.......)))).))....))))))).)))).........

Thermodynamic Ensemble Prediction

(({.........{(((...(((.({{{{(((,,...(((((.....))))).,,..))))))).))}..)))),...,,|||(((,.........,{......,,,,{(({....,|||{{({{,{({.,,((((((({{{{{(.{{,,,.||,}|||{{{{{..(((....}})........,{||{{{|,|....{{{.....,,((,{(((...{{||{|||,|.{({{.........,,,,|||{.||.....(((((......)))))......,.||||,.,,...,|||,..,|||}||,|,||}}}}}|.}||},}}.......)))...,,||||.||||.||............,|||||{...(((((({....)).)))))..,))))}}..............,..,,,,,,,,,.||...,,..(((((......))))).},..||,...)),.,}})}}...,,||}}.}})})),{{{{,,,.)))),|||{{||,||.{{{|,..,,..)})),}},...})))}}}.))))}}}}),,})