Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0013200

Sequence Length

310 nt

GC Content

0.4613

ACACCAAAUCCUACUGCAAGCGAGUUUAUUCCUAAAGGAGGAUCAACCUCCAGGCUGAGUAACGUGUCCCAGUCAAAUAUGUCUGCCUUCUCUCAAGUUUUCUCUCACCCAUCCAUGGGAAGCCCUGCUACUGCUGGAUUAGCGCCAGCAGUUCCUACAGAGGUUGACAGCUACCAUAGCCUAUUCCCUCUAGAACCACUGCCACCUCCCAACCGGAUACAGAAAUCAAGUAAUUUUGGAUAUAUUACAUCUUGCUACAAAGCUGUAAACAGCAAAGAUGAUCUGCCAUAUUGCCUUCGGAGGAUACAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.50 kcal/mol

Ensemble Metrics

Free Energy: -71.69

Frequency: 0.0000

Diversity: 80.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.........((((...(((.(((.((((.....(((((.....))))).....))))))).)))..))))......)))(((..((((((.(((..........((((....)))).(((...)))((((((((.......))))))))......(((((......((((...))))......))))).......(((...((........))...))).......(((((..(((........((((((((((((....)))....))).)))))).....))).)))))))).))))))..)).)

Thermodynamic Ensemble Prediction

....{{.(((((.(((.{,((({,.,.,.,,.....(((((.....))))).((({(,{,,,,.|,,|.))))|.,,,,|||({|..,,..{,..,{.,,,,,....{{{(,,,.||||,(((...|}}((((((((.......))))))))......{((((..,...((({...))))......))))),}.....,,,.....}}|},...))},.,})},,.,.,|,.,,..|}}}}}}}}}.((((((((((((....))),...}))}}})))).....,,,..)))),)}))))))))...})