Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0015600

Sequence Length

411 nt

GC Content

0.4501

GAAUGUCGUUGUCUGCUGGGUCUUCCCCUCUUCAUUCCCCCAAGAUUACUCCACAUACUUCUCCUGCUCCCAGAAGAAGAAGUCACACUCCAAAUCCAGCAAGUUACAUGGUGCCUUCUAGUGCCUCUACAUCUGUUAAUAAUCCUGUUUCUCAGACUCCGUCUUCUGGUCAGGUGAUCCAAAAGGAAACUGUUGGUGGGACGACUUACUUCUAUACAGACACAACUCCAGCACCUUUGACUGGAAUGGUGUUUCCAAACUAUCAUAUUUAUCCUCCAACUGCACCUCACGUUGCUUAUAUGCAACCGAAAGCAAACGCACCUUCCUUCUUCAUGGCUGAUGAACUCCGACAGGAGCUGAUCAACAGACAUUUAAUAACAAUGGCUCAAAUUGAUCAAGCAGAUAUGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.10 kcal/mol

Ensemble Metrics

Free Energy: -97.70

Frequency: 0.0000

Diversity: 64.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((.(((.((((((((((....)))........((((((((.(....(((.......((.((((...((((((((.(.(((((((..........((((.((.....(((((......))))).....)).))))........)))......)))).).)))))))).)))).)).......)))...).)))).))))................((((((...(((((((....)).)))))...)))))).............((((((..(((............(((((......))))).....((....))..............)))..))))))((((....)))).(((((((.((.((((.......)))).))....))))))))))))))))).)).

Thermodynamic Ensemble Prediction

...((.(({{((((((((((....})),...,,..((((((((.{....(((.......((.((((...((((((((.{.((((..,..........((({.{,.....(((((......)))))......,,)))}........|}}....,.)))).}.)))))))).)))).)).......)))...,.)))).)))).|,.............{(((((...(((((((....)).)))))...)))))}..............,,.,,..,,,...|,...,...(((((......))))).|,..||....)}...,,,....,{{,|}}..}))))}((((....)))).(((((((.,(.((((.......)))).,)....))))))))))))))))).)).