Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0016000

Sequence Length

469 nt

GC Content

0.4307

ACUUGUUCUCUAAAACCAAUUAUUGCUCCAUUAAGAAACAUUUUUACAUCUUCUUCAGGAAUGUCGUUGUCUGCUGGGUCUUCCCCUCUUCAUUCCCCCAAGAUUACUCCACAUACUUCUCCUGCUCCCAGAAGAAGAAGUCACACUCCAAAUCCAGCAAGUUACAUGGUGCCUUCUAGUGCCUCUACAUCUGUUAAUAAUCCUGUUUCUCAGACUCCGUCUUCUGGUCAGGUGAUCCAAAAGGAAACUGUUGGUGGGACGACUUACUUCUAUACAGACACAACUCCAGCACCUUUGACUGGAAUGGUGUUUCCAAACUAUCAUAUUUAUCCUCCAACUGCACCUCACGUUGCUUAUAUGCAACCGAAAGCAAACGCACCUUCCUUCUUCAUGGCUGAUGAACUCCGACAGGAGCUGAUCAACAGACAUUUAAUAACAAUGGCUCAAAUUGAUCAAGCAGAUAUGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.00 kcal/mol

Ensemble Metrics

Free Energy: -101.65

Frequency: 0.0000

Diversity: 98.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((...................(((...(((((.............)))))..)))((((.((.((((...(((................)))...)))).))...)))).(((((.(((....))).)))))..................)))))))(....(((((......)))))........(((((.(((..(((((..((((.(((((((....((..(((((.(((....)))....(((((.((((.((.............((((((...(((((((....)).)))))...))))))..............)).)))))))))(((...((..(((((......))))).))..)))....))))).))...(((((.....)))))....))).))))))))..)))))....))).))))).((((.....(((......)))....)))))

Thermodynamic Ensemble Prediction

{{,{({{.,..............,,.,,,...{{{{{.............}}}},.}))},,|}({,(((((((((((....})),....,..((((((((.{....(((.......((.((((...((((((((.{.((((..,..........((({.{,.....(((((......)))))......,,))}}........|}}....,.)))).}.)))))))).)))).)).......)))...,.)))).)))).|,.............{(((((...(((((((....)).)))))...))))},..............,,.,,..,,,...|,...,...(((((......))))).},..||....)}...,,,....,{{{|}}..}))))}((((....)))).(((((((.,{.((((.......)))).}}....))))))))))))))),},.,}