Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0018600

Sequence Length

402 nt

GC Content

0.4527

ACUCCGUCUUCUGGUCAGGUGAUCCAAAAGGAAACUGUUGGUGGGACGACUUACUUCUAUACAGACACAACUCCAGCACCUUUGACUGGAAUGGUGUUUCCAAACUAUCAUAUUUAUCCUCCAACUGCACCUCACGUUGCUUAUAUGCAACCGAAAGCAAACGCACCUUCCUUCUUCAUGGCUGAUGAACUCCGACAGGAGCUGAUCAACAGACAUUUAAUAACAAUGGCUCAAAUUGAUCAAGCAGAUAUGCCAGCAGUUCCUACAGAGGUUGACAGCUACCAUAGCCUAUUCCCUCUAGAACCACUGCCACCUCCCAACCGGAUACAGAAAUCAAGAGGUUCAAAAUGGAAGACUGUUUAGGCUCCUAGCAAAAUUGGGAACAAUCAAUGAGAGGCCGGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.60 kcal/mol

Ensemble Metrics

Free Energy: -99.49

Frequency: 0.0000

Diversity: 92.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...(((((((((..(((((.(((....)))....(((((.((((.((.............((((((...(((((((....)).)))))...))))))..............)).)))))))))(((...((..(((((......))))).))..)))....))))).))...(((((.....)))))((((....)))).(((((((.((.((((.......)))).))....))))))).(((....)))..(((((......(((((......((((...))))......)))))......))))).(((((((....)).............))))).......))))))).))((.((((.((......((((....)))).....)).)))).))

Thermodynamic Ensemble Prediction

((...((((((({((.(((((.{((....||}..,.(((((.((((.((.............((((((...(((((((....)).)))))...))))))..............}}.))))))))),{|}}}}.,,(((((......))))).|,..((....))..,},},,,,{((({...,,)}))}((((....)))).(((((((.,(.((((.......)))).,)....))))))).(({....))),,(({((,,,,..(((((......((({...})))......))))).,,...})))}.,{{(({.....)),..,,,..,},.,))))}.......))))))).))({.((((,((......{(((....))))...,.)),)))).))