Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0019300

Sequence Length

325 nt

GC Content

0.4277

GUGUUUCCAAACUAUCAUAUUUAUCCUCCAACUGCACCUCACGUUGCUUAUAUGCAACCGAAAGCAAACGCACCUUCCUUCUUCAUGGCUGAUGAACUCCGACAGGAGCUGAUCAACAGACAUUUAAUAACAAUGGCUCAAAUUGAUCAAGCAGAUAUGCCAGCAGUUCCUACAGAGGUUGACAGCUACCAUAGCCUAUUCCCUCUAGAACCACUGCCACCUCCCAACCGGAUACAGAAAUCAAGUAAUUUUGGAUAUAUUACAUCUUGCUACAAAGCUGUAAACAGCAAAGAUGAUCUGCCAUAUUGCCUUCGGAGGAUACAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-69.70 kcal/mol

Ensemble Metrics

Free Energy: -76.44

Frequency: 0.0000

Diversity: 50.70

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((....))).))(((...((((((((....(((......(((((......))))).....((....)).............(((((.(((...((((....)))).(((((((.((.((((.......)))).))....))))))).(((....)))..(((((......(((((......((((...))))......)))))......)))))....(((.....))).........((((....)))).........((((((((((((....)))....))).))))))))).)))))..)))....)))))))).)))

Thermodynamic Ensemble Prediction

(((({....})).))(((...((((((((....(({......(((((......))))).|{,.((....))...........,,(({{{.{|{,,.((((....)))).(((((((.,(.((((.......)))).,)....))))))).(((,,,.}|}..(((((......(((((......((((...))))......))))).,....)))))....,{(.....))|..,.....,,.,|....})))}........((((((((((((....))),...}))}}}))))))),))}}}..)))....)))))))).)))