Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PAN3_0024100

Sequence Length

284 nt

GC Content

0.4225

AGAAUAAUGGAAUAUUCUGGGAGGGAGGCUUAAUACAGCAUCAGUUCAGGGUGGAACCAAACUGAAAAUUCUGCUGCUUGAAGAGUUGGAAGACUGUGUGUUGGUACCUGCUGCUCAAACACGUGAUAAAUAACAACAAUCUUUGGUUUCAGAAGGAUCCCACUUGGUCAGAGACUGGAGACCGUUAUCUGUUGAAACUCUUUAGGGAUCAUCUUUUUCAUCAGGUGACAGAAGCAGGUGCUCCCUGGAUUGACCUCAGUCAUAUAAUUUCUUGUCUUAACAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.40 kcal/mol

Ensemble Metrics

Free Energy: -73.76

Frequency: 0.0000

Diversity: 110.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((......))))))(((((....((((....(((((....(((((..((....))..))))).....)))))(((((((((((.......(((((...((((.....))))...)))))..........(((((.....(((((((...((..((((....))...))..)).))))))).....))))).)))))))))))..((((((........))))))...)))).....)))))..(((((....))))).........(((((....)))))

Thermodynamic Ensemble Prediction

(((.{{,,{{...,,,||{{((({,,.(({.....{|||{{(((((((({,,{...,||..|}}}.,,{{{|}|},,,.,.|}||||...,},|}|,||}}}|(((((((({.|{,...|||,{,,......,,.....{((((((((((.{,,{(,,,...,,,}|}}.}}}}))))))),,|{{{{{|{,||{||}},...||||,,..,||,}})}).)))))))},}.))))))))))))))}|||||,,},)}))),,.,,.)))(((((....)))))