Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0000200

Sequence Length

270 nt

GC Content

0.3704

ACUGCCUUAGAACUAACAGGAGUGCUCAGUAUGAUUUGGCAUACGGACUCUUGAAUGACAUGGACUGUAUAUAACGUAUAUUGGAAAAGAAUACAUUUGUGUUUCCUCUGUUAGUGUUAAAGAGCAACAAGAAAACUUAAGGAUGAUCUCCAACUCACUUAUACAUGAGAAAUUAGGUUCAGAUUUUAAUUUCAUUGAUUUAUCUGAGGUCACAGUCAUAUUCAUGUGGUGGAACUGGGGCAGCCCUUAAGAUAUCCUGGAAGCUUAGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.40 kcal/mol

Ensemble Metrics

Free Energy: -58.77

Frequency: 0.0000

Diversity: 88.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((((((......(((((((.(...(((((......)))))).))))))).((.(((((((((((............(((((...((...(((((..((((.((.((((.((........)))))))).))))....))))).)))))))((((........))))......(.(((((((...((((.....)))).))))))).).)))))).....))))).))....)))))))))...(((((............)))))..

Thermodynamic Ensemble Prediction

.(((((((((..{{..(((((((.(...(((((......)))))),))))))).{(.(({(((((((({{,,...,}}}}|,(({...,{{{{(.,,,}}|}}}}}{|||||.||.,,....,)))}}},},.,,|,,,,{{|,,.,|))),.{(((........||}|....,.{.{((((((.{{(({{...,,)),,.))))))).}.})))))....,))))).)))}..)))))))))...{((((...,,.......)))))..