Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0005300

Sequence Length

371 nt

GC Content

0.4124

GGGUAGAAAUAUUUCUGUCAUGGCUCAUUCAAAGACUAGGACCAAUGAUGGAAAAAUUACAUAUCCGCCUGGGGUCAAGGAAAUAUCAGAUAAAAUAUCUAAAGAGGAGAUGGUGAGACGAUUAAAGAGCAGAAUCUCCUGAAUCUAGUGCAAUUGAAUCCACACAGUCCACACCACAGAAAGGACGAGGAAGACCAUCAAAAACGCCAUCACCAUCACAACCAAAAAAAAAUGUCCGUGUAGGACGCUCCAAACAAGCAGCUACUAAGGAAAAUGAUUCAAGUGAAGAAGUAGAUGUGUUUCAGGGUAGCUCUCCUGUCGAUGAUAUUCCACAGGAAGAAACAGAGGAGGAGGAAGUUUCUACAGUAAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.20 kcal/mol

Ensemble Metrics

Free Energy: -81.50

Frequency: 0.0000

Diversity: 87.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((((.((((((((((((.((.............)))).)))))))))).........(((.(((.(..((...........(((((...)))))...((((.(((((((....((((.((..(((((.((....)).))...)))..)).))))......((((............))))((((....)).)).....))))))).)).))................((((.....))))(((.......)))(((((((...((((.....((.(.(.....).).))....))))..))))))).((((((.((......)).)))))).))..)..))).)))....)))))))).......

Thermodynamic Ensemble Prediction

,.((((((((.((((((((((((,({..,,...,,...}),)),,))))))))).......,,|||.{{(,{||{...,|.......(((((...)))))...,,{{.((((((({..,({{{..{{,{(((,.,{..,,)}.))}.{||,..,|.,.}|..,...((((............)))){{((....)).)).....))}},))}))}))................((((.....))))|||||.....,|,(((((((...((({....,((.,.{.....}.}.)},.,.))))..))))))}{((((((.((......)).)))))),},..,...},,)}}},..)))))))).......