Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0027100

Sequence Length

266 nt

GC Content

0.4323

AAACUGUACACUGUGUGUGAUGUUGCCAUGAAUAUCAUCAUGUCAAAGAGUACUACAUACAGUUUGGAAUCUCCUAAAGACCCGGUACUACCAGCUCGUUUCUUCACUCAACCUGACAAGCCUAAAACAACCAAUGUUCUAGGAGCUGUUAACAAGCCACUUUCAUCAGCAGGCAAGCAAUCUCAGACCAAAUCAUCACGAAUGGAAACUGUAAGCAAUGCAAGCAGCAGCUCAAAUCCAAGCUCUCCUGGAAGAAUAAAGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-50.70 kcal/mol

Ensemble Metrics

Free Energy: -54.73

Frequency: 0.0014

Diversity: 64.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((...((((.(((...(((.(((((......))))).)))....)))))))))))))))(((...))).........(((...))).(((.(((..............))).)))(((.((((.....)))).)))((((((((..................((..(((.((.....(((.(((..((.....)).)))...)))...))..)))..)))))))))).........(((((((..........)))))))

Thermodynamic Ensemble Prediction

(,,{({{{.{{((((((((.,.(((.(((((......))))).)))....)},)))))))))),}|{,.|{{||,...,,...(((...})).{({.(((..............))}.)))(((.((((.....)))).)))((((((({.....{{{.,,.......|,.}||,.((,....(((.(((..((.....)).)))...)))...}}..)))..}}))))))))....,,...{{{{{{|,,,.......}))))))