Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0027300

Sequence Length

462 nt

GC Content

0.3810

AUGUCUUUGGUUUGUUCUGGAAAUAUUAAUGGCUAAAAAUGAAAAUAACAGUCACGCUUUUAUCAGAAAGAUGGUAGAAAAUAUUAAACAAACAAAAGAUGCCCAAGGACCAGAUGAUGCAAAAAUGAAUGAAAAACUGUACACUGUGUGUGAUGUUGCCAUGAAUAUCAUCAUGUCAAAGAGUACUACAUACAGUUUGGAAUCUCCUAAAGACCCGGUACUACCAGCUCGUUUCUUCACUCAACCUGACAAGAAUUUCAGUAACACCAAAAAUUAUCUGCCUCCUGAAAUGAAAUCAUUUUUCACUCCUGGAAAACCUAAAACAACCAAUGUUCUAGGAGCUGUUAACAAGCCACUUUCAUCAGCAGGCAAGCAAUCUCAGACCAAAUCAUCACGAAUGGAAACUGUAAGCAAUGCAAGCAGCAGCUCAAAUCCAAGCUCUCCUGGAAGAAUAAAGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-86.80 kcal/mol

Ensemble Metrics

Free Energy: -95.16

Frequency: 0.0000

Diversity: 126.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((((((((((.((..((((((..(((((...............)))))...((((((((......))))))))))))))...))))))))......))))))))..((((((.......(((.....((((((((...((((.(((...(((.(((((......))))).)))....)))))))))))))))(((...)))..((((..((((.......)).))..))))........((((........)))).................(((((.((((..(((((...(((((((....)))))))((((.((((.....)))).)))).(((.......)))...))))))))).))))).......)))......)))))).....((((...((..(((..(((.....))))))))..))))..(((((((..........)))))))

Thermodynamic Ensemble Prediction

..((((((((((((((.((..{{{{{{..(((((.....,.....,...))))}...((((((((......))))))))}}}}}}...}}}}}}}}......}}}||||},,((((((.......(((.((({((((,{{,.{{((((((((.,.(((.(((((......))))).)))....)},))))))))))||((,...}})...,{{.,.(((...})).}.,}}}}},}}}}.}}}..((((........))))...........,,,,,,||{{|,||((..(((({...,|||||{{(((((((|........,,,.....,,))))))))|{||......}}}...}}}}}}})).))))}.,,....,}},.,,,.}}))}}.....{(({..,{{..{((..{{{...,.)))))),,..)))}..(((((((..........)))))))