Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0028600

Sequence Length

309 nt

GC Content

0.3560

GGAAAAAUUAUGAGAGGAAGUUGAGAGGUAGUCUGAUUAUGUUUGGACUUCGUAAACCAUGGUAAGGAGUUUGGAUUUGAUUUUAAGUGCAACUGAAAGAUUUGCCAGGGAGUCUAGCAAUCUCAUUUGUGGUUUUUAAAAAAAAUUGCCCUGAUGAUUUGUGCAGAAUGUACUAUAGAGGAGCUAGAAUUGAGGUAGAAAAAGCAAUUAGGAGUCAGCGAAUCAUAAUCUAUGGCAGGGAUGAAGAGGGAAGAAGAUGGUAAAUAGUCAAAUUUCAGAUUUUUUUUUUAAGAGUAGUGAAAUGCAGUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-51.40 kcal/mol

Ensemble Metrics

Free Energy: -58.83

Frequency: 0.0000

Diversity: 123.09

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((...(((((.((((((.(((.(((((...))))).))).)))))).....((((((......(((((...((((((((...(((...((..((((((......))))))..))((((((.((.((((((((.....(((((........)))))(((((...))))).....)))))))).)).)))))).......)))....)))))))))))))......))))))....................(((........)))...)))))....)))))))((...(((......)))..))

Thermodynamic Ensemble Prediction

(((({{({{{((,,(.((((((.(((.(((((...))))).))).)))))).}...{||||||,.{{(((((({{{(((((({{,{,{{{,,,{,..,,{{(({{{,.,||,|||.{|,,{{(({.{{|{{{({(({.....,|||||{{{{..|,|{{,{((({...}}}}}.,,.,|,}.}||,,|,||,.}}},,,....})},}}.,}}}}}})).,.}},,,.})},}}}}}.},,}.,..},}|.,,,.,{{.,.,.,..))),,,})))),})))))))))|.,..(((......)))..)}