Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PDS5B_0029000

Sequence Length

684 nt

GC Content

0.4401

UCUGAAUUGGAGAAGCCUAGAGGCAGGAAAAAAACGCCCGUCACAGAACAGGAGGAGAAAUUAGGUAUGGAUGACUUGACUAAGUUGGUACAGGAACAGAAACCUAAAGGCAGUCAGCGAAGUCGGAAAAGAGGCCAUACGGCUUCAGAAUCUGAUGAACAGCAGUGGCCUGAGGAAAAGAGGCUCAAAGAAGAUAUAUUAGAAAAUGAAGAUGAACAGAAUAGUCCGCCAAAAAAGGGUAAAAGAGGCCGACCACCAAAACCUCUUGGUGGAGGUACACCAAAAGAAGAGCCAACAAUGAAAACUUCUAAAAAAGGAAGCAAAAAAAAAUCUGGACCUCCAGCACCAGAGGAGGAGGAAGAAGAAGAAAGACAAAGUGGAAAUACGGAACAGAAGUCCAAAAGCAAACAGCACCGAGUGUCAAGGAGAGCACAGCAGAGAGCAGAAUCUCCUGAAUCUAGUGCAAUUGAAUCCACACAGUCCACACCACAGAAAGGACGAGGAAGACCAUCAAAAACGCCAUCACCAUCACAACCAAAAAAAAAUGUCCGUGUAGGACGCUCCAAACAAGCAGCUACUAAGGAAAAUGAUUCAAGUGAAGAAGUAGAUGUGUUUCAGGGUAGCUCUCCUGUCGAUGAUAUUCCACAGGAAGAAACAGAGGAGGAGGAAGUUUCUACAGUAAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-147.90 kcal/mol

Ensemble Metrics

Free Energy: -160.14

Frequency: 0.0000

Diversity: 120.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((..((((((..(((....))).............((.((........)).))........(((.((((((.((((((((...)))).))))........(((..((((.....((...((((((...((((((....))))))....)))))).....))....)))).)))......(((((........................(((..........))).(((.......))).......(((..(((((((......))))))).)))............)))))...........(((((......)))))..........(((...(((((..(......)..)))))....)))...........(((((.....(((.......)))...........((((..((..(((.(((((.....((.....))....))))))))..)).)))).......)))))...((((............))))((((....)).))..............)))).)))))..........((((.....)))).))))))......(((((((...((((.....((.(.(.....).).))....))))..))))))).((((((.((......)).))))))((((((.............)))))).))).....

Thermodynamic Ensemble Prediction

,(((..,(((((..(((....|||.{........,,}||{(({..{.,{{||{{|........(((,((({((.((((((({...}))).))))........(((..((((...,.((...((((((...((((((....))))))....)))))).....)).,..)))).)))......(((((............,,......,....,,..........}}|.{((......,)}}......,(((..(((((({......))))))).))).,.,,.......)))))...........(((((......)))))..........{{{...(((((..(......)..)))))....,,,...........(((((.....(({.{....})))...........((((..((..((,{(((((...,.((.....)).,..))))))))..)).))))...,,..)))))...((((............)))){{((....)).}}.......,,,}.,,)))}.,,}))..........((((.....)))){||}},....,|}(((((((...((({....,((...,.....}.}.)},.,.))))..))))))))||||||},,}}},..))|}}}))}{,,,{{...,,,,......,))))).)})....,