Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PHKA2_0002700

Sequence Length

381 nt

GC Content

0.5118

GAGAUUGUGGUUUACCUGGCCAUGUAUGUCAGGGCGCAGCCCAGCCUCUUUGUGGAGAUGCUGAGACUCCGGAUUGGACUGAUCAUUCAGGUGAUGGCCACGGAGCUGGCACGGAGCCUGAACUGCUCAGGAGAAGAGGCUUCUGAAAGUUUGAUGAACCUCAGCCCUUUCGAUAUGAAAAAUCUCCUGCACCAUAUUCUAAGUGGGAAAGAGUUUGGCGUUGAAAGAAGUGUGCGCCCUAUCCACUCCUCCACAUCCAGCCCUACCAUCUCCAUCCACGAGGUGGGCCAUACCGGAGUCACCAAAACUGAGAGGAGUGGCAUUAACAGACUGAGGAGUGAAAUGAAACAGAUGACUAGGCGGUUUAGUGCUGAUGAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-111.80 kcal/mol

Ensemble Metrics

Free Energy: -119.29

Frequency: 0.0000

Diversity: 119.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((.....)))))).((((((.((((...))))(((((((((.(((((.........))))).......((((.(((((((((..((((((......)))).))..))))))).)).))))..)))))))))...(((((.((((......))))..)))))))))))...))))))(((..((((.......))))..........(((((............)))))....(((((((((((..(((.......(((((((.......)))))))........)))...........)).)))))))))(((((((((((((...(((.(..((...))..).)))...)))))).))..)))))..)))

Thermodynamic Ensemble Prediction

(({((,((((((.....)))))),.,,.}}(((((((({{{{((((((({,.,{|||,,||||,,.,{{{{...,}},((((.(((((((((..((((((......)))).))..))))))).}}.||||,,{.,||||))|||||.,||||...}},}}))))}.{(((({{{.{|||{,|||||{{{{.{{{{.......))))},.,))}})),},))}}}}}}..,..))))))))..{(((((((({,,.({{.(,.,.,(((((((.......)))))))||,...,.}}}.,.........)).)))))))))|{{{,,.,(((((...(((.(..((...))..).)))...))))))})))}}}}))..}))