Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PHKA2_0005400

Sequence Length

512 nt

GC Content

0.4375

CAAAUGAUGGCUCAGACAUUCAUUCUGCUGUGCUCUCCACAAUUAGAAAACUAGAGGAUGGAUAUUUUGGAGGAGCCAGAGUAAAAUUAGGGAACCUUUCGGAAUUUCUCACCACAUCGUUCUACACAUAUCUGACUUUUCUGGAUCCAGACUGUGAUGAGAAGUUGUUUGACAAUGCCAGCGAAGGGACUUUCAGUCCUGAUAGUGAUUCAGAUUUGGUAGGAUAUCUGGAAGACACCUGUAAUCAAGAAAGCCAAGACGAACUUGACCAUUAUAUCAACCACCUUCUGCAAAGCACAUCGUUGAGGUCCUAUCUGCCUCCUCUUUGUAAGAACACAGAAGACCGCCAUGUCUUCAGUGCUAUCCACUCCACGCGGGACAUACUUUCUGUGAUGGCAAAAGCAAAGGGUUUGGAAGUUCCAUUUGUUCCCAUGACUUUGCCGACUAAAGUUCUAAGUGCCCACCGUAAAUCACUGAAUCUUGUUGAUUCUCCUCAGCCACUCCUAGAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-116.00 kcal/mol

Ensemble Metrics

Free Energy: -126.10

Frequency: 0.0000

Diversity: 192.47

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((.((.......(((((.((((.....))))..))))).......(((((((((....(((((((.((((.......((((....((((((((..((((.((((.(((......(((.((((...((((.((((((.(((((..............)))))...)).)))).))))(((((...))))).))))))).....))).))))))))..))))))))...))))...........(((..(((((..((((........))))........(((...)))..)))))..)))....)))).))))))).........(((.((((((......)))))).))).)))))).)))(((.(((.((((((((..((..(((((((..((..(((..((((...))))......))).))..))))))))).))))).....))))))..)))........(((((.....)))))..)).))))).)).........

Thermodynamic Ensemble Prediction

,,,,,({((({{.{{.,|{|||||{|}{(((,.{{{.,,,...,}}}..,).}|}||||||||{,,,,(((((((.{{({,,.....{{((({{({{,,,(((((((((,({((,({,,,{{{,(,{,,{(({{,{{{,.({{||,.{|||{}}}}.},,}}}}||}|}}}....,.}}}|,|}}|(((((...))))),,|,,|||..}||)}}.||}|}}|}|||,|||,,,....,||,..{{{{{...{.,..,.}...))))},,,..,},}}.},,|,,,|}{|{...|}|,.,,},,|||||,,,.}}}),)))}})}.,,,.....({{.((((((......)))))).))).},}}}}.}||{(((((((......})))))).|||{{{{.|||..|||..{|||,,,)))}...,,}))).)},,)))))},,,.}}}}}|,,.{{((......,.....}}},(({((.....))))).,}}.})))),},.,.,...,,